JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WASHC5_chr8_125019260_125096792	0/0	c0020	3480	1	1	0	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0021	3480	1	0	0	0	0	1	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	c0022	3480	1	0	0	1	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASL_chr7_123676943_123754003	1/1	c0001	1518	189	59	34	73	7	14	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	c0002	1518	150	29	24	64	7	26	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	c0003	1518	15	0	1	14	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	c0004	1518	1	0	0	1	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	c0005	1518	1	0	1	0	0	0	copy fasta	WASL	chr7	123676943	123754003
WAS_chrX_48678799_48696427	1/1	c0001	1509	257	72	51	98	11	23	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	c0002	1509	6	0	0	6	0	0	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	c0003	1510	3	0	0	2	0	1	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	c0004	1509	1	0	1	0	0	0	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	c0005	1508	1	0	0	1	0	0	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	c0006	1510	1	0	0	0	0	1	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	c0007	1509	1	1	0	0	0	0	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	c0008	1510	1	1	0	0	0	0	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	c0009	1510	1	0	0	1	0	0	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	c0010	1509	1	0	0	0	0	1	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	c0011	1511	1	0	0	1	0	0	copy fasta	WAS	chrX	48678799	48696427
WBP11_chr12_14779582_14808478	1/1	c0001	1926	365	76	77	148	16	46	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	c0002	1926	9	0	0	9	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	c0003	1926	9	7	2	0	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	c0004	1926	1	1	0	0	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	c0005	1926	1	0	1	0	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	c0006	1926	1	0	0	1	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP1L_chr10_102738948_102821262	1/0	c0001	1092	148	35	33	65	5	9	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	c0002	1092	127	33	25	47	6	16	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/1	c0003	1092	70	3	16	40	1	9	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	c0004	1092	7	3	2	0	0	2	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	c0005	1092	4	4	0	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	c0006	1092	2	2	0	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	c0007	1092	1	0	0	1	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	c0008	1092	1	0	0	1	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1_chr2_74453438_74465881	0/1	c0001	810	194	72	23	87	2	9	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	1/0	c0002	810	127	16	43	37	10	20	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	c0003	810	12	0	5	0	3	4	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	c0004	810	4	0	4	0	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	c0005	810	2	1	1	0	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	c0006	810	2	0	0	0	1	1	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	c0007	810	1	1	0	0	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	c0008	810	1	1	0	0	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	c0009	810	1	0	0	1	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	c0010	810	1	0	0	1	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	c0011	810	1	1	0	0	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP2NL_chr22_41993788_42033475	0/0	c0001	930	197	23	22	128	4	20	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	1/1	c0002	930	86	6	25	27	9	17	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	c0003	930	73	42	24	0	5	2	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	c0004	930	12	12	0	0	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	c0005	930	9	8	1	0	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	c0006	930	3	0	0	3	0	0	copy fasta	WBP2NL	chr22	41993788	42033475