JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WBP2NL_chr22_41993788_42033475	0/0	c0007	930	2	2	0	0	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	c0008	930	1	0	0	1	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	c0009	930	1	1	0	0	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	c0010	930	1	0	0	1	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	c0011	930	1	0	0	0	0	1	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	c0012	930	1	0	0	1	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	c0013	905	1	0	0	1	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2_chr17_75840699_75860335	1/1	c0001	786	367	87	69	154	18	37	copy fasta	WBP2	chr17	75840699	75860335
WBP2_chr17_75840699_75860335	0/0	c0002	786	6	1	2	2	0	1	copy fasta	WBP2	chr17	75840699	75860335
WBP2_chr17_75840699_75860335	0/0	c0003	786	4	4	0	0	0	0	copy fasta	WBP2	chr17	75840699	75860335
WBP2_chr17_75840699_75860335	0/0	c0004	786	2	0	0	0	0	2	copy fasta	WBP2	chr17	75840699	75860335
WBP2_chr17_75840699_75860335	0/0	c0005	786	1	0	1	0	0	0	copy fasta	WBP2	chr17	75840699	75860335
WBP2_chr17_75840699_75860335	0/0	c0006	786	1	0	0	1	0	0	copy fasta	WBP2	chr17	75840699	75860335
WBP2_chr17_75840699_75860335	0/0	c0007	786	1	1	0	0	0	0	copy fasta	WBP2	chr17	75840699	75860335
WBP2_chr17_75840699_75860335	0/0	c0008	786	1	1	0	0	0	0	copy fasta	WBP2	chr17	75840699	75860335
WBP2_chr17_75840699_75860335	0/0	c0009	786	1	0	0	1	0	0	copy fasta	WBP2	chr17	75840699	75860335
WBP4_chr13_41056509_41089006	1/1	c0001	1131	397	71	65	205	14	40	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	c0002	1131	14	13	1	0	0	0	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	c0003	1131	4	4	0	0	0	0	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	c0004	1131	2	0	0	2	0	0	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	c0005	1131	1	0	0	1	0	0	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	c0006	1131	1	0	1	0	0	0	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	c0007	1131	1	0	1	0	0	0	copy fasta	WBP4	chr13	41056509	41089006
WDCP_chr2_24024347_24052391	1/0	c0001	2166	279	73	62	91	15	37	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/1	c0002	2166	34	11	6	6	3	7	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	c0003	2166	2	0	0	2	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	c0004	2166	2	0	2	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	c0005	2166	1	0	1	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	c0006	2166	1	0	1	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	c0007	2166	1	0	0	1	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	c0008	2166	1	1	0	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	c0009	2166	1	0	1	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	c0010	2166	1	0	0	1	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	c0011	2166	1	0	1	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	c0012	2166	1	1	0	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	c0013	2166	1	0	0	1	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDFY1_chr2_223870348_223950335	1/1	c0001	1233	308	80	42	148	6	30	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	c0002	1233	68	9	7	48	0	4	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	c0003	1233	1	0	1	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	c0004	1233	1	1	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	c0005	1233	1	1	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	c0006	1233	1	1	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY2_chr13_51579462_51772709	1/1	c0001	1203	226	75	43	73	9	24	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	c0002	1203	43	1	8	25	5	4	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	c0003	1203	5	0	5	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	c0004	1203	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	c0005	1203	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	c0006	1203	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	c0007	1203	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY3_chr4_84664597_84971690	1/1	c0001	10581	107	33	19	35	5	13	copy fasta	WDFY3	chr4	84664597	84971690