JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDFY3_chr4_84664597_84971690	0/0	c0002	10581	106	28	26	35	4	13	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	c0003	10581	7	0	2	0	1	4	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	c0004	10581	3	3	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	c0005	10581	3	3	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	c0006	10581	2	0	0	2	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	c0007	10581	2	0	0	2	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	c0008	10581	2	2	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	c0009	10581	1	0	0	0	0	1	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	c0010	10581	1	0	0	1	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	c0011	10581	1	1	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	c0012	10581	1	0	0	0	0	1	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	c0013	10581	1	1	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	c0014	10581	1	0	0	1	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	c0015	10581	1	0	0	0	0	1	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	c0016	10581	1	1	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	c0017	10581	1	0	0	0	0	1	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	c0018	10581	1	0	1	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY4_chr10_48679873_48987956	0/1	c0001	9555	18	2	10	2	1	2	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0002	9555	11	1	4	5	1	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0003	9555	5	1	3	1	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0004	9555	4	4	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0005	9555	4	0	1	3	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0006	9555	4	0	2	1	1	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0007	9555	4	3	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0008	9555	3	2	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0009	9555	3	3	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0010	9555	3	0	1	0	1	1	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0011	9555	3	1	0	0	0	2	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0012	9555	3	0	2	0	0	1	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0013	9555	2	0	0	0	0	2	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0014	9555	2	2	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0015	9555	2	0	2	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0016	9555	2	2	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0017	9555	2	0	2	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0018	9555	2	0	0	2	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0019	9555	2	2	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0020	9555	2	0	0	1	0	1	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0021	9555	2	0	0	1	0	1	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0022	9555	2	0	2	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0023	9555	2	2	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0024	9555	2	1	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0025	9555	2	0	1	0	0	1	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0026	9555	2	0	1	0	1	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0027	9555	2	0	0	2	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0028	9555	2	2	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0029	9555	2	2	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0030	9555	2	0	0	2	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0031	9555	2	2	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0032	9555	2	0	0	2	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0033	9555	2	2	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956