JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BPIFA3_chr20_33212352_33232806	0/0	c0003	765	6	0	0	6	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	c0004	765	5	5	0	0	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	c0005	765	4	0	0	4	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	c0006	765	3	2	0	1	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	c0007	765	3	3	0	0	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	c0008	765	2	1	1	0	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	c0009	765	1	1	0	0	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	c0010	765	1	0	0	0	0	1	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	c0011	765	1	0	0	1	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	c0012	765	1	0	1	0	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	c0013	765	1	0	1	0	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	c0014	765	1	0	1	0	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	c0015	765	1	0	0	1	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	c0016	765	1	0	0	1	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	c0017	765	1	1	0	0	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFB1_chr20_33278214_33314871	0/0	c0001	1455	119	11	21	67	3	17	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0002	1455	93	22	24	42	1	4	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	1/1	c0003	1455	73	3	22	25	7	14	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0004	1455	37	13	5	14	1	4	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0005	1455	10	9	1	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0006	1455	8	8	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0007	1455	8	8	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0008	1455	8	8	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0009	1455	5	5	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0010	1455	4	0	2	0	1	1	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0011	1455	3	0	0	0	2	1	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0012	1455	2	0	0	2	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0013	1455	2	0	1	0	1	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0014	1455	2	2	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0015	1455	2	1	1	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0016	1455	2	2	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0017	1455	1	1	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0018	1455	1	0	1	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0019	1455	1	0	1	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0020	1455	1	1	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0021	1455	1	1	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0022	1455	1	1	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0023	1455	1	0	0	0	0	1	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0024	1455	1	1	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0025	1455	1	0	1	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	c0026	1455	1	1	0	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB2_chr20_33002704_33028703	1/1	c0001	1377	200	35	45	86	7	25	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	c0002	1377	135	43	15	60	6	11	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	c0003	1377	24	5	12	0	1	6	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	c0004	1377	6	1	4	0	1	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	c0005	1377	6	3	3	0	0	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	c0006	1377	4	3	1	0	0	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	c0007	1377	3	3	0	0	0	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	c0008	1377	2	0	0	2	0	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	c0009	1377	2	2	0	0	0	0	copy fasta	BPIFB2	chr20	33002704	33028703