JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDFY4_chr10_48679873_48987956	0/0	c0084	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0085	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0086	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0087	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0088	9555	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0089	9555	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0090	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0091	9555	1	0	0	0	0	1	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0092	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0093	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0094	9555	1	0	0	0	1	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0095	9555	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0096	9555	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0097	9555	1	0	0	1	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0098	9555	1	0	0	1	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0099	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0100	9555	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0101	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	1/0	c0102	9555	1	0	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0103	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0104	9555	1	0	0	1	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0105	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0106	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0107	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0108	9555	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0109	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0110	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0111	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0112	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0113	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0114	9555	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0115	9555	1	0	0	0	0	1	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0116	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0117	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0118	9555	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0119	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0120	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0121	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0122	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0123	9555	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0124	9555	1	0	0	0	1	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0125	9555	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0126	9555	1	0	0	1	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0127	9555	1	0	0	0	0	1	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	c0128	9555	1	0	0	1	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDHD1_chr14_54933949_55032099	1/1	c0001	3390	225	51	57	83	10	22	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0002	3390	14	11	0	1	0	2	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0003	3390	8	2	1	0	1	4	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0004	3390	5	5	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0005	3390	5	3	0	2	0	0	copy fasta	WDHD1	chr14	54933949	55032099