JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDHD1_chr14_54933949_55032099	0/0	c0006	3390	5	0	4	0	1	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0007	3390	3	0	0	3	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0008	3390	3	2	1	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0009	3390	2	1	1	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0010	3390	2	2	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0011	3390	1	1	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0012	3390	1	0	0	1	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0013	3390	1	1	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0014	3390	1	0	0	0	0	1	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0015	3390	1	1	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0016	3390	1	0	0	0	0	1	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0017	3390	1	1	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0018	3390	1	0	0	1	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0019	3390	1	0	1	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0020	3390	1	0	1	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0021	3390	1	0	0	1	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0022	3390	1	1	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0023	3390	1	1	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	c0024	3390	1	1	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDPCP_chr2_63114559_63593477	1/1	c0001	2241	213	65	44	57	13	32	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	c0002	2241	1	0	0	0	1	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	c0003	2241	1	0	0	1	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	c0004	2241	1	1	0	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDR11_chr10_120846362_120914524	1/0	c0001	3675	134	17	28	71	3	14	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0002	3675	85	3	20	54	1	7	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/1	c0003	3675	61	14	11	24	4	7	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0004	3675	39	12	9	9	4	5	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0005	3675	14	13	1	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0006	3675	13	10	2	0	0	1	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0007	3675	8	8	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0008	3675	5	5	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0009	3675	3	0	0	3	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0010	3675	3	0	0	3	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0011	3675	3	0	0	0	1	2	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0012	3675	2	0	0	0	2	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0013	3675	2	2	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0014	3675	2	2	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0015	3675	2	2	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0016	3675	1	0	0	0	1	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0017	3675	1	0	1	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0018	3675	1	0	0	1	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0019	3675	1	1	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0020	3675	1	1	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0021	3675	1	0	0	1	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0022	3675	1	0	0	1	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0023	3675	1	1	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0024	3675	1	0	0	1	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	c0025	3675	1	1	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR12_chr2_202869261_202916673	1/1	c0001	1272	362	88	71	158	10	33	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	c0002	1272	13	0	5	4	4	0	copy fasta	WDR12	chr2	202869261	202916673