JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR18_chr19_979345_999557	0/0	c0002	1299	116	25	20	53	6	12	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	1/0	c0003	1299	62	0	17	42	0	2	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0004	1299	43	1	0	37	0	5	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0005	1299	31	20	8	1	0	2	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0006	1299	22	0	1	15	2	4	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0007	1299	5	1	0	4	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0008	1299	5	5	0	0	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0009	1299	5	0	0	5	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0010	1299	3	3	0	0	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0011	1299	3	3	0	0	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0012	1299	3	0	0	0	1	2	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0013	1299	2	1	0	1	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0014	1299	2	0	0	2	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0015	1299	2	2	0	0	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0016	1299	1	0	0	1	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0017	1299	1	1	0	0	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0018	1299	1	1	0	0	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0019	1299	1	1	0	0	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0020	1299	1	1	0	0	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0021	1299	1	0	0	0	0	1	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0022	1299	1	0	0	0	0	1	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0023	1299	1	0	1	0	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	c0024	1299	1	1	0	0	0	0	copy fasta	WDR18	chr19	979345	999557
WDR19_chr4_39177529_39290810	1/1	c0001	4029	174	38	33	79	5	17	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	c0002	4029	54	0	11	36	0	7	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	c0003	4029	22	15	3	0	3	1	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	c0004	4029	14	13	1	0	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	c0005	4029	10	3	3	2	0	2	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	c0006	4029	5	5	0	0	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	c0007	4029	5	0	0	5	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	c0008	4029	2	0	0	2	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	c0009	4029	1	0	0	0	0	1	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	c0010	4029	1	1	0	0	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	c0011	4029	1	1	0	0	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	c0012	4029	1	0	0	1	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	c0013	4029	1	0	1	0	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	c0014	4029	1	0	0	0	0	1	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	c0015	4029	1	0	0	0	0	1	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	c0016	4029	1	0	0	1	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR1_chr4_10069339_10121799	0/1	c0001	1821	223	33	47	107	12	23	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	1/0	c0002	1821	180	58	27	68	6	20	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	c0003	1821	3	3	0	0	0	0	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	c0004	1821	1	0	0	1	0	0	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	c0005	1821	1	1	0	0	0	0	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	c0006	1821	1	1	0	0	0	0	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	c0007	1821	1	0	0	0	0	1	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	c0008	1821	1	1	0	0	0	0	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	c0009	1821	1	0	0	0	0	1	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	c0010	1821	1	0	0	0	0	1	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	c0011	1821	1	1	0	0	0	0	copy fasta	WDR1	chr4	10069339	10121799