JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR20_chr14_102134897_102215527	1/1	c0001	1710	140	19	36	62	6	15	copy fasta	WDR20	chr14	102134897	102215527
WDR20_chr14_102134897_102215527	0/0	c0002	1710	118	70	18	17	2	11	copy fasta	WDR20	chr14	102134897	102215527
WDR20_chr14_102134897_102215527	0/0	c0003	1710	2	0	0	2	0	0	copy fasta	WDR20	chr14	102134897	102215527
WDR20_chr14_102134897_102215527	0/0	c0004	1710	1	1	0	0	0	0	copy fasta	WDR20	chr14	102134897	102215527
WDR20_chr14_102134897_102215527	0/0	c0005	1710	1	0	0	1	0	0	copy fasta	WDR20	chr14	102134897	102215527
WDR20_chr14_102134897_102215527	0/0	c0006	1710	1	0	0	1	0	0	copy fasta	WDR20	chr14	102134897	102215527
WDR20_chr14_102134897_102215527	0/0	c0007	1710	1	0	0	1	0	0	copy fasta	WDR20	chr14	102134897	102215527
WDR24_chr16_679622_695398	0/0	c0001	2373	201	51	25	98	3	24	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	1/1	c0002	2373	142	33	42	44	6	15	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	c0003	2373	14	0	2	0	3	9	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	c0004	2373	7	6	1	0	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	c0005	2373	2	1	1	0	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	c0006	2373	1	1	0	0	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	c0007	2373	1	0	1	0	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	c0008	2373	1	1	0	0	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	c0009	2373	1	0	0	0	0	1	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	c0010	2373	1	0	0	0	0	1	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	c0011	2373	1	0	1	0	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	c0012	2373	1	0	0	1	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	c0013	2373	1	1	0	0	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	c0014	2373	1	0	0	1	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	c0015	2373	1	0	1	0	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	c0016	2373	1	0	0	1	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	c0017	2373	1	0	0	1	0	0	copy fasta	WDR24	chr16	679622	695398
WDR25_chr14_100371485_100535303	0/0	c0001	1635	70	38	9	18	2	3	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	c0002	1635	69	28	6	29	1	5	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	c0003	1635	42	4	8	18	3	9	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	c0004	1635	18	10	1	7	0	0	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	c0005	1635	16	0	3	8	4	1	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	c0006	1635	6	0	0	6	0	0	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	c0007	1635	2	2	0	0	0	0	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	c0008	1635	2	2	0	0	0	0	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	c0009	1635	2	2	0	0	0	0	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	c0010	1635	1	0	1	0	0	0	copy fasta	WDR25	chr14	100371485	100535303
WDR26_chr1_224380146_224439797	1/1	c0001	2286	156	33	37	47	5	32	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	c0002	2289	49	27	11	6	0	5	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	c0003	2286	34	15	7	0	5	7	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	c0004	2289	6	6	0	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	c0005	2283	3	2	0	1	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	c0006	2286	3	3	0	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	c0007	2289	1	0	1	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR27_chr6_169452212_169707029	0/0	c0001	2688	56	1	13	40	0	2	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0002	2688	37	9	11	6	1	10	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	1/0	c0003	2688	32	18	3	3	1	6	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0004	2688	29	1	8	17	1	2	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0005	2688	23	0	3	19	0	1	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0006	2688	20	10	6	1	1	2	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0007	2688	13	2	1	8	1	1	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0008	2688	7	0	0	7	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0009	2688	5	0	0	5	0	0	copy fasta	WDR27	chr6	169452212	169707029