JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR27_chr6_169452212_169707029	0/0	c0010	2688	5	5	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0011	2688	4	3	1	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0012	2688	4	3	1	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0013	2688	4	1	0	3	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0014	2688	3	3	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0015	2688	3	0	0	3	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0016	2688	3	3	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0017	2688	2	2	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0018	2688	2	0	0	2	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0019	2688	2	0	0	0	0	2	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0020	2688	2	2	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0021	2688	2	1	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0022	2688	2	0	2	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0023	2688	2	1	1	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0024	2688	2	1	1	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0025	2688	2	2	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0026	2688	2	2	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0027	2688	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0028	2688	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0029	2688	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0030	2688	1	0	0	0	0	1	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0031	2688	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0032	2688	1	0	1	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0033	2688	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0034	2688	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0035	2688	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0036	2688	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0037	2688	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0038	2688	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0039	2688	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0040	2688	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0041	2688	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0042	2688	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/1	c0043	2688	1	0	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0044	2688	1	0	0	0	1	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0045	2688	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0046	2688	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0047	2688	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0048	2688	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0049	2688	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0050	2688	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0051	2688	1	0	0	0	0	1	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	c0052	2688	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR31_chr9_113308222_113345275	1/1	c0001	1104	334	86	57	153	8	28	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	c0002	1104	45	0	2	38	0	5	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	c0003	1104	28	0	6	10	3	9	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	c0004	1104	2	0	0	2	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	c0005	1104	2	2	0	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	c0006	1104	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	c0007	1104	1	0	1	0	0	0	copy fasta	WDR31	chr9	113308222	113345275