JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR31_chr9_113308222_113345275	0/0	c0008	1104	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	c0009	1104	1	0	0	0	1	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	c0010	1104	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR33_chr2_127696027_127816171	1/1	c0001	4011	275	77	48	105	9	34	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	c0002	4011	18	6	7	3	0	2	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	c0003	4011	6	0	3	0	3	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	c0004	4011	3	3	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	c0005	4011	3	3	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	c0006	4011	2	0	0	0	0	2	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	c0007	4011	2	0	0	2	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	c0008	4011	1	0	1	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	c0009	4011	1	0	1	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	c0010	4011	1	0	0	1	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	c0011	4011	1	1	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	c0012	4011	1	0	1	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	c0013	4011	1	0	1	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	c0014	4011	1	1	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	c0015	4011	1	1	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	c0016	4011	1	0	0	1	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR35_chr2_19905263_19995105	0/0	c0001	3513	131	29	29	50	7	16	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	1/0	c0002	3513	70	31	6	25	0	7	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/1	c0003	3513	53	9	12	20	4	7	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0004	3513	52	0	11	32	1	8	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0005	3513	45	4	1	37	3	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0006	3513	13	5	5	2	0	1	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0007	3513	5	5	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0008	3513	4	0	0	4	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0009	3513	4	4	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0010	3513	3	0	0	2	0	1	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0011	3513	2	2	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0012	3513	2	2	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0013	3513	2	0	0	2	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0014	3513	1	0	0	1	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0015	3513	1	1	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0016	3513	1	1	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0017	3513	1	0	1	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0018	3513	1	1	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0019	3513	1	0	0	1	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0020	3513	1	1	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0021	3513	1	0	1	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0022	3513	1	1	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0023	3513	1	0	0	0	1	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0024	3513	1	0	0	1	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	c0025	3513	1	0	0	1	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR36_chr5_111087348_111135502	1/0	c0001	2688	256	57	41	127	8	22	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/1	c0002	2688	94	5	23	51	3	11	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	c0003	2688	31	12	7	4	1	7	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	c0004	2688	16	14	2	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	c0005	2688	5	5	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	c0006	2688	3	0	0	0	0	3	copy fasta	WDR36	chr5	111087348	111135502