JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR36_chr5_111087348_111135502	0/0	c0007	2688	2	2	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	c0008	2688	2	0	0	2	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	c0009	2688	2	0	0	2	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	c0010	2688	1	0	0	1	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	c0011	2688	1	0	1	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	c0012	2688	1	0	0	1	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	c0013	2688	1	1	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	c0014	2688	1	0	0	1	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	c0015	2688	1	0	0	1	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	c0016	2688	1	0	0	1	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	c0017	2688	1	0	0	0	0	1	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	c0018	2688	1	0	0	1	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR37_chr10_1051385_1137372	1/1	c0001	1485	355	90	62	150	16	35	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	c0002	1485	3	0	2	1	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	c0003	1485	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	c0004	1485	1	0	0	0	0	1	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	c0005	1485	1	0	0	1	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	c0006	1485	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR38_chr9_124848460_124862878	0/0	c0001	945	183	40	42	67	11	23	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/1	c0002	945	142	40	23	67	3	8	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	c0003	945	57	5	1	46	0	5	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	c0004	945	16	0	8	7	0	1	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	c0005	945	8	8	0	0	0	0	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	1/0	c0006	945	4	3	0	0	0	0	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	c0007	945	2	0	0	2	0	0	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	c0008	945	1	0	1	0	0	0	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	c0009	945	1	0	0	1	0	0	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	c0010	945	1	0	0	0	0	1	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	c0011	945	1	0	1	0	0	0	copy fasta	WDR38	chr9	124848460	124862878
WDR3_chr1_117924739_117971543	1/1	c0001	2832	327	63	58	153	11	40	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0002	2832	12	8	0	4	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0003	2832	10	2	2	2	0	4	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0004	2832	6	5	1	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0005	2832	5	1	2	0	1	1	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0006	2832	4	0	0	4	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0007	2832	2	2	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0008	2832	2	2	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0009	2832	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0010	2832	1	0	1	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0011	2832	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0012	2832	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0013	2832	1	0	0	0	0	1	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0014	2832	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0015	2832	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0016	2832	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0017	2832	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	c0018	2832	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR41_chr5_77425933_77497316	1/1	c0001	1380	198	34	31	91	12	28	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	c0002	1380	190	46	37	82	5	20	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	c0003	1380	10	7	3	0	0	0	copy fasta	WDR41	chr5	77425933	77497316