JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR41_chr5_77425933_77497316	0/0	c0004	1380	4	0	3	0	1	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	c0005	1380	3	0	3	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	c0006	1380	2	0	0	2	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	c0007	1380	2	1	1	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	c0008	1380	1	0	0	1	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	c0009	1380	1	0	0	1	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	c0010	1380	1	0	0	1	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR43_chr2_28889667_28953219	0/0	c0001	2034	130	17	31	69	4	9	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/1	c0002	2034	89	24	21	28	6	9	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	1/0	c0003	2034	55	18	8	23	1	4	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	c0004	2034	24	6	6	0	3	9	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	c0005	2034	16	14	2	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	c0006	2034	3	3	0	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	c0007	2034	3	0	0	3	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	c0008	2034	2	2	0	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	c0009	2034	2	2	0	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	c0010	2034	1	1	0	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	c0011	2034	1	1	0	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	c0012	2034	1	0	0	1	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	c0013	2034	1	0	0	1	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	c0014	2034	1	0	0	1	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	c0015	2034	1	0	0	1	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	c0016	2034	1	0	0	1	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	c0017	2034	1	0	0	0	0	1	copy fasta	WDR43	chr2	28889667	28953219
WDR44_chrX_118341106_118454961	1/1	c0001	2742	102	1	18	57	7	17	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	c0002	2742	85	31	10	41	0	3	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	c0003	2742	51	29	4	14	0	4	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	c0004	2742	48	11	15	19	0	3	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	c0005	2742	1	0	0	1	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	c0006	2742	1	0	1	0	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	c0007	2742	1	0	0	1	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	c0008	2741	1	0	0	1	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	c0009	2742	1	0	0	0	0	1	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	c0010	2741	1	0	0	1	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	c0011	2743	1	0	0	1	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR45B_chr17_82609562_82653444	1/1	c0001	1035	303	78	51	131	8	33	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	c0002	1035	73	10	23	23	5	12	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	c0003	1035	3	3	0	0	0	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	c0004	1035	1	1	0	0	0	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	c0005	1035	1	0	0	0	1	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	c0006	1035	1	0	0	0	0	1	copy fasta	WDR45B	chr17	82609562	82653444
WDR45_chrX_49069442_49084887	1/1	c0001	1083	260	76	46	97	11	28	copy fasta	WDR45	chrX	49069442	49084887
WDR45_chrX_49069442_49084887	0/0	c0002	1083	5	0	4	1	0	0	copy fasta	WDR45	chrX	49069442	49084887
WDR45_chrX_49069442_49084887	0/0	c0003	1084	1	0	0	1	0	0	copy fasta	WDR45	chrX	49069442	49084887
WDR45_chrX_49069442_49084887	0/0	c0004	1084	1	0	0	1	0	0	copy fasta	WDR45	chrX	49069442	49084887
WDR45_chrX_49069442_49084887	0/0	c0005	1084	1	0	0	1	0	0	copy fasta	WDR45	chrX	49069442	49084887
WDR46_chr6_33274108_33294239	0/0	c0001	1833	305	87	49	129	14	26	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	c0002	1833	32	0	8	17	1	6	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	c0003	1833	9	2	5	2	0	0	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	c0004	1833	6	0	2	0	2	2	copy fasta	WDR46	chr6	33274108	33294239