JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BPIFB2_chr20_33002704_33028703	0/0	c0010	1377	2	1	1	0	0	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	c0011	1377	1	0	0	0	1	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	c0012	1377	1	1	0	0	0	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	c0013	1377	1	0	1	0	0	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	c0014	1377	1	1	0	0	0	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB3_chr20_33048903_33078847	0/1	c0001	1419	177	18	35	100	2	21	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	1/0	c0002	1419	122	24	31	41	9	16	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0003	1419	15	5	3	4	0	3	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0004	1419	12	12	0	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0005	1419	11	8	3	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0006	1419	6	5	1	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0007	1419	5	4	1	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0008	1419	3	3	0	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0009	1419	2	0	0	2	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0010	1419	2	2	0	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0011	1419	2	0	1	0	1	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0012	1419	2	2	0	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0013	1419	2	0	0	0	0	2	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0014	1419	2	2	0	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0015	1419	1	1	0	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0016	1419	1	0	1	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0017	1419	1	1	0	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0018	1419	1	1	0	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0019	1419	1	1	0	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0020	732	1	0	0	1	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0021	1419	1	1	0	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0022	1419	1	0	0	1	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0023	1419	1	0	1	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0024	1419	1	0	1	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	c0025	1419	1	0	0	1	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB4_chr20_33074643_33116751	0/1	c0001	1845	136	25	25	65	1	19	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0002	1845	79	8	18	39	4	10	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0003	1845	39	13	11	3	6	6	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0004	1845	13	5	2	3	0	3	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0005	1845	10	9	1	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0006	1845	10	7	2	0	1	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0007	1845	8	0	0	8	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0008	1845	7	7	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	1/0	c0009	1845	6	1	1	1	2	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0010	1845	6	5	1	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0011	1845	4	4	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0012	1845	3	3	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0013	1845	3	0	0	3	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0014	1845	2	0	0	1	0	1	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0015	1845	2	0	0	0	0	2	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0016	1845	2	0	1	1	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0017	1845	1	1	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0018	1445	1	0	0	1	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0019	1845	1	1	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0020	1845	1	0	0	0	0	1	copy fasta	BPIFB4	chr20	33074643	33116751