JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR46_chr6_33274108_33294239	0/1	c0005	1833	5	1	2	0	1	0	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	c0006	1833	2	2	0	0	0	0	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	c0007	1833	2	2	0	0	0	0	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	c0008	1833	2	0	0	2	0	0	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	c0009	1833	2	0	0	2	0	0	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	c0010	1833	2	0	0	2	0	0	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	c0011	1833	1	0	0	1	0	0	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	c0012	1833	1	0	0	0	0	1	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	c0013	1737	1	1	0	0	0	0	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	c0014	1833	1	0	0	0	0	1	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	c0015	1833	1	0	0	1	0	0	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	c0016	1833	1	1	0	0	0	0	copy fasta	WDR46	chr6	33274108	33294239
WDR47_chr1_108965214_109047102	1/1	c0001	2760	330	93	54	130	18	33	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	c0002	2760	5	0	5	0	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	c0003	2760	2	0	0	2	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	c0004	2760	1	1	0	0	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	c0005	2760	1	0	1	0	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	c0006	2760	1	1	0	0	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	c0007	2760	1	1	0	0	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	c0008	2760	1	0	0	0	0	1	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	c0009	2760	1	0	1	0	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	c0010	2760	1	0	1	0	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR48_chr3_39047016_39101664	1/1	c0001	2034	177	19	24	113	6	13	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	c0002	2034	151	49	23	61	8	10	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	c0003	2034	25	22	3	0	0	0	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	c0004	2034	5	2	2	0	0	1	copy fasta	WDR48	chr3	39047016	39101664
WDR49_chr3_167473684_167658942	1/1	c0001	3150	80	35	16	16	3	8	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0002	3150	37	9	7	12	3	6	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0003	3150	28	9	7	11	0	1	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0004	3150	10	0	0	10	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0005	3150	8	3	1	4	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0006	3150	8	8	0	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0007	3150	7	5	2	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0008	3150	6	1	2	3	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0009	3150	4	0	0	4	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0010	3150	4	4	0	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0011	3150	2	0	2	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0012	3150	2	0	0	2	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0013	3150	2	1	1	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0014	3150	2	0	0	0	0	2	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0015	3150	1	1	0	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0016	3150	1	1	0	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0017	3150	1	1	0	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0018	3150	1	0	1	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0019	3150	1	0	0	1	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0020	3150	1	0	0	0	0	1	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0021	3150	1	0	1	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0022	3150	1	0	0	1	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0023	3150	1	1	0	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	c0024	3150	1	1	0	0	0	0	copy fasta	WDR49	chr3	167473684	167658942