JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR4_chr21_42844226_42884539	1/0	c0001	1239	171	9	37	95	4	25	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/1	c0002	1239	85	39	17	20	3	5	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	c0003	1239	82	7	7	54	2	12	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	c0004	1239	19	7	5	0	4	3	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	c0005	1239	13	13	0	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	c0006	1239	11	1	4	0	3	3	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	c0007	1239	6	4	2	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	c0008	1239	6	5	1	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	c0009	1239	2	2	0	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	c0010	1239	1	1	0	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	c0011	1239	1	1	0	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	c0012	1239	1	0	1	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	c0013	1239	1	0	0	1	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	c0014	1239	1	1	0	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR53_chr3_196549177_196573554	1/1	c0001	1077	269	36	51	135	8	37	copy fasta	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	c0002	1077	97	41	21	15	8	12	copy fasta	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	c0003	1077	18	16	2	0	0	0	copy fasta	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	c0004	1077	1	0	0	0	0	1	copy fasta	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	c0005	1077	1	1	0	0	0	0	copy fasta	WDR53	chr3	196549177	196573554
WDR54_chr2_74416730_74430755	1/1	c0001	1005	385	97	63	178	12	33	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	c0002	1005	2	0	1	1	0	0	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	c0003	1005	1	0	1	0	0	0	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	c0004	1005	1	1	0	0	0	0	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	c0005	1005	1	0	0	0	0	1	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	c0006	1005	1	0	1	0	0	0	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	c0007	1005	1	1	0	0	0	0	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	c0008	1005	1	0	0	1	0	0	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	c0009	1005	1	1	0	0	0	0	copy fasta	WDR54	chr2	74416730	74430755
WDR55_chr5_140659904_140677345	0/0	c0001	1152	146	16	26	79	4	21	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	c0002	1152	93	46	13	26	4	4	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/1	c0003	1152	92	6	14	53	8	10	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	1/0	c0004	1152	17	15	1	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	c0005	1152	13	0	3	7	0	3	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	c0006	1152	9	8	1	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	c0007	1152	5	5	0	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	c0008	1152	2	2	0	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	c0009	1152	1	0	0	1	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	c0010	1152	1	0	0	1	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	c0011	1152	1	0	0	1	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	c0012	1152	1	0	0	1	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	c0013	1152	1	0	0	1	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR59_chr16_74866362_74990123	1/1	c0001	2925	204	28	36	90	13	35	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0002	2925	18	11	4	0	1	2	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0003	2925	18	12	4	0	2	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0004	2925	7	6	1	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0005	2925	5	5	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0006	2925	4	4	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0007	2925	3	3	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0008	2925	3	1	0	0	2	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0009	2925	2	0	2	0	0	0	copy fasta	WDR59	chr16	74866362	74990123