JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR59_chr16_74866362_74990123	0/0	c0010	2925	2	2	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0011	2925	2	2	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0012	2925	2	2	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0013	2925	2	1	1	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0014	2925	1	0	0	1	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0015	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0016	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0017	2925	1	0	0	0	0	1	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0018	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0019	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0020	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0021	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0022	2925	1	0	0	1	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0023	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0024	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0025	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0026	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0027	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0028	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0029	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0030	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0031	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0032	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0033	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0034	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	c0035	2925	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR5B_chr3_122406846_122421062	1/1	c0001	993	345	84	58	156	13	32	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	c0002	993	115	11	19	67	4	14	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	c0003	993	2	0	0	2	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	c0004	993	1	0	0	0	1	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	c0005	993	1	0	1	0	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	c0006	993	1	0	0	1	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	c0007	993	1	1	0	0	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5_chr9_134131082_134164968	1/0	c0001	1005	234	56	35	107	10	25	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/1	c0002	1005	134	17	28	65	8	15	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	c0003	1005	19	13	6	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	c0004	1005	11	0	0	11	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	c0005	1005	5	4	1	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	c0006	1005	1	0	0	1	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	c0007	1005	1	1	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	c0008	1005	1	1	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR62_chr19_36049897_36110108	0/0	c0001	4572	169	20	32	92	7	18	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0002	4572	59	0	11	36	5	7	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	1/0	c0003	4572	36	18	7	0	2	8	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0004	4572	30	20	4	0	1	5	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0005	4572	27	0	3	19	0	5	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0006	4572	19	1	2	13	0	3	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/1	c0007	4572	10	3	5	0	0	1	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0008	4572	8	0	0	8	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0009	4572	8	8	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108