JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR62_chr19_36049897_36110108	0/0	c0010	4572	5	4	1	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0011	4572	5	5	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0012	4572	5	0	0	5	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0013	4572	4	3	1	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0014	4572	4	0	0	4	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0015	4572	4	0	3	0	1	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0016	4572	3	2	1	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0017	4572	2	0	0	0	2	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0018	4572	2	1	1	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0019	4572	2	2	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0020	4572	2	2	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0021	4572	1	0	0	1	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0022	4572	1	0	0	1	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0023	4572	1	0	0	1	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0024	4572	1	0	0	1	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0025	4572	1	0	0	1	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0026	4572	1	1	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0027	4572	1	0	0	1	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0028	4572	1	0	0	1	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0029	4572	1	0	0	0	0	1	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0030	4572	1	0	0	1	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0031	4572	1	1	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0032	4572	1	1	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0033	4572	1	1	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0034	4572	1	0	0	1	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0035	4572	1	0	1	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	c0036	4572	1	1	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR64_chr1_241647281_241807777	0/0	c0001	3276	115	14	15	71	3	12	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	1/1	c0002	3276	105	11	25	45	10	12	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0003	3276	23	13	5	0	3	2	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0004	3276	21	20	1	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0005	3276	6	0	1	5	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0006	3276	6	6	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0007	3276	4	0	1	3	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0008	3276	4	3	1	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0009	3276	4	4	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0010	3276	4	4	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0011	3276	3	3	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0012	3276	2	2	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0013	3276	2	1	0	0	0	1	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0014	3276	2	1	1	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0015	3276	2	2	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0016	3276	2	2	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0017	3276	2	2	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0018	3276	2	2	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0019	3276	2	0	2	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0020	3276	2	0	1	0	1	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0021	3276	2	0	1	0	1	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0022	3276	1	0	0	1	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0023	3276	1	1	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777