JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR64_chr1_241647281_241807777	0/0	c0024	3276	1	1	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0025	3276	1	0	0	1	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0026	3276	1	0	1	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0027	3276	1	0	0	0	0	1	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0028	3276	1	0	0	1	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0029	3276	1	0	1	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0030	3276	1	0	0	1	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0031	3276	1	1	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	c0032	3276	1	1	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR6_chr3_49002391_49020951	1/1	c0001	3366	231	81	48	65	18	17	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	c0002	3366	3	3	0	0	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	c0003	3366	2	0	0	0	0	2	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	c0004	3366	2	0	2	0	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	c0005	3366	2	0	0	0	0	2	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	c0006	3366	1	0	0	1	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	c0007	3366	1	1	0	0	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	c0008	3366	1	1	0	0	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	c0009	3366	1	0	0	1	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	c0010	3366	1	0	0	1	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	c0011	3366	1	1	0	0	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	c0012	3366	1	0	0	0	0	1	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	c0013	3366	1	1	0	0	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR70_chr5_37374318_37758435	1/1	c0001	1965	220	65	43	80	6	24	copy fasta	WDR70	chr5	37374318	37758435
WDR70_chr5_37374318_37758435	0/0	c0002	1965	10	9	1	0	0	0	copy fasta	WDR70	chr5	37374318	37758435
WDR70_chr5_37374318_37758435	0/0	c0003	1965	6	6	0	0	0	0	copy fasta	WDR70	chr5	37374318	37758435
WDR70_chr5_37374318_37758435	0/0	c0004	1965	2	1	1	0	0	0	copy fasta	WDR70	chr5	37374318	37758435
WDR70_chr5_37374318_37758435	0/0	c0005	1965	1	0	1	0	0	0	copy fasta	WDR70	chr5	37374318	37758435
WDR70_chr5_37374318_37758435	0/0	c0006	1965	1	1	0	0	0	0	copy fasta	WDR70	chr5	37374318	37758435
WDR70_chr5_37374318_37758435	0/0	c0007	1965	1	1	0	0	0	0	copy fasta	WDR70	chr5	37374318	37758435
WDR70_chr5_37374318_37758435	0/0	c0008	1965	1	1	0	0	0	0	copy fasta	WDR70	chr5	37374318	37758435
WDR72_chr15_53508741_53764663	0/0	c0001	3309	88	12	23	43	3	7	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0002	3309	87	18	14	43	3	9	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/1	c0003	3309	64	4	17	29	6	7	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0004	3309	19	16	3	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0005	3309	6	6	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0006	3309	5	5	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0007	3309	5	0	0	5	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0008	3309	5	0	3	2	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0009	3309	5	4	1	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0010	3309	4	4	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0011	3309	4	0	0	3	0	1	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0012	3309	4	4	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0013	3309	3	1	1	0	0	1	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	1/0	c0014	3309	2	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0015	3309	2	0	2	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0016	3309	2	1	1	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0017	3309	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0018	3579	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0019	3309	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0020	3309	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663