JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR72_chr15_53508741_53764663	0/0	c0021	3309	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0022	3309	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0023	3309	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0024	3309	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0025	3309	1	0	1	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0026	3309	1	0	0	1	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	c0027	3309	1	0	0	0	0	1	copy fasta	WDR72	chr15	53508741	53764663
WDR73_chr15_84634285_84659283	0/0	c0001	1137	226	53	24	122	7	20	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0002	1137	51	2	18	24	2	5	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0003	1119	33	0	12	3	4	14	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0004	1137	24	11	8	0	3	2	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0005	1119	19	9	0	8	1	1	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/1	c0006	1137	10	7	1	0	0	1	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0007	1137	9	2	5	2	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0008	1137	5	5	0	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0009	1137	3	3	0	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0010	1137	2	2	0	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0011	1119	2	0	0	2	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0012	1119	1	1	0	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	1/0	c0013	1137	1	0	0	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0014	1119	1	0	0	0	1	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0015	1137	1	0	0	0	0	1	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0016	1137	1	1	0	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0017	1137	1	0	0	1	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0018	1137	1	0	1	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0019	1119	1	1	0	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0020	1137	1	1	0	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	c0021	1119	1	0	1	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR74_chr11_62827911_62844590	1/1	c0001	1158	354	75	63	161	12	41	copy fasta	WDR74	chr11	62827911	62844590
WDR74_chr11_62827911_62844590	0/0	c0002	1158	47	9	5	30	2	1	copy fasta	WDR74	chr11	62827911	62844590
WDR74_chr11_62827911_62844590	0/0	c0003	1158	5	5	0	0	0	0	copy fasta	WDR74	chr11	62827911	62844590
WDR74_chr11_62827911_62844590	0/0	c0004	1158	2	2	0	0	0	0	copy fasta	WDR74	chr11	62827911	62844590
WDR74_chr11_62827911_62844590	0/0	c0005	1158	1	0	0	1	0	0	copy fasta	WDR74	chr11	62827911	62844590
WDR74_chr11_62827911_62844590	0/0	c0006	1158	1	1	0	0	0	0	copy fasta	WDR74	chr11	62827911	62844590
WDR74_chr11_62827911_62844590	0/0	c0007	1158	1	0	0	1	0	0	copy fasta	WDR74	chr11	62827911	62844590
WDR74_chr11_62827911_62844590	0/0	c0008	1158	1	0	0	1	0	0	copy fasta	WDR74	chr11	62827911	62844590
WDR75_chr2_189436474_189480552	1/1	c0001	2493	156	45	29	62	5	13	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	c0002	2493	152	21	32	72	11	16	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	c0003	2493	22	6	9	5	0	2	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	c0004	2493	10	10	0	0	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	c0005	2493	10	0	0	10	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	c0006	2493	2	2	0	0	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	c0007	2493	1	0	1	0	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	c0008	2493	1	0	0	0	0	1	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	c0009	2493	1	1	0	0	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	c0010	2493	1	0	0	1	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	c0011	2493	1	0	0	0	0	1	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	c0012	2493	1	1	0	0	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	c0013	2493	1	0	0	1	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	c0014	2493	1	0	1	0	0	0	copy fasta	WDR75	chr2	189436474	189480552