JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR75_chr2_189436474_189480552	0/0	c0015	2493	1	0	0	1	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	c0016	2493	1	1	0	0	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	c0017	2493	1	1	0	0	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	c0018	2493	1	0	0	0	0	1	copy fasta	WDR75	chr2	189436474	189480552
WDR76_chr15_43822002_43873412	0/1	c0001	1881	260	60	37	135	9	18	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	1/0	c0002	1881	39	25	3	0	3	7	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	c0003	1881	2	0	2	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	c0004	1881	1	0	0	0	0	1	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	c0005	1881	1	1	0	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	c0006	1881	1	0	0	1	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	c0007	1881	1	1	0	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	c0008	1881	1	1	0	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR77_chr1_111434890_111454256	1/1	c0001	1029	363	94	54	162	12	39	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	c0002	1029	49	0	2	40	0	7	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	c0003	1029	2	2	0	0	0	0	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	c0004	1029	1	1	0	0	0	0	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	c0005	1029	1	0	0	0	1	0	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	c0006	1029	1	1	0	0	0	0	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	c0007	1029	1	0	0	0	1	0	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	c0008	1029	1	0	0	1	0	0	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	c0009	1029	1	0	0	1	0	0	copy fasta	WDR77	chr1	111434890	111454256
WDR7_chr18_56646359_57034792	0/0	c0001	4473	52	22	2	21	0	7	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/1	c0002	4473	39	8	8	13	2	7	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	c0003	4473	19	17	2	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	1/0	c0004	4473	11	9	1	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	c0005	4473	6	6	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	c0006	4473	4	4	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	c0007	4473	3	3	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	c0008	4473	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	c0009	4473	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	c0010	4473	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	c0011	4473	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	c0012	4473	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	c0013	4473	1	0	1	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	c0014	4473	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	c0015	4473	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	c0016	4473	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	c0017	4473	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR81_chr17_1719704_1743585	0/1	c0001	5826	91	1	11	69	1	8	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0002	5826	69	20	22	17	2	8	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0003	5826	59	2	19	28	6	4	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0004	5823	47	2	12	26	1	6	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0005	5823	18	3	0	9	0	6	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0006	5826	15	2	1	12	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0007	5826	15	15	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0008	5823	8	3	2	0	1	2	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0009	5826	7	7	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0010	5826	6	0	0	6	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0011	5823	5	0	3	0	0	2	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0012	5826	5	1	1	0	2	1	copy fasta	WDR81	chr17	1719704	1743585