JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR81_chr17_1719704_1743585	0/0	c0013	5826	5	5	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0014	5826	4	0	0	4	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0015	5826	4	4	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0016	5826	4	3	1	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0017	5826	4	0	0	4	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0018	5826	4	4	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0019	5826	3	3	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0020	5823	2	0	0	0	2	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0021	5823	2	0	0	1	1	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0022	5826	2	1	1	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0023	5826	2	1	0	0	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0024	5826	2	2	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0025	5826	2	0	0	2	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0026	5826	2	2	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0027	5826	2	1	1	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0028	5823	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0029	5823	1	0	1	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0030	5826	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0031	5826	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0032	5823	1	0	0	0	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0033	5826	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0034	5826	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0035	5826	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0036	5826	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0037	5826	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0038	5826	1	0	1	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0039	5826	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0040	5826	1	0	0	0	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0041	5826	1	0	0	0	1	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0042	5826	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0043	5826	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0044	5823	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0045	5823	1	0	0	0	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0046	5826	1	0	0	0	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0047	5826	1	0	0	0	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0048	5826	1	0	0	0	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0049	5826	1	0	0	0	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0050	5826	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0051	5826	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0052	5826	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0053	5826	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0054	5826	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0055	5823	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0056	5826	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0057	5826	1	0	0	0	1	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0058	5826	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0059	5826	1	0	1	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0060	5826	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0061	5826	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0062	5826	1	0	0	0	0	1	copy fasta	WDR81	chr17	1719704	1743585