JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR81_chr17_1719704_1743585	0/0	c0063	5826	1	0	1	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0064	5826	1	0	0	0	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0065	5826	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0066	5826	1	0	0	0	0	1	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0067	5826	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0068	5823	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	c0069	5826	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR82_chr3_52249434_52283649	1/1	c0001	942	325	52	66	152	13	40	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	c0002	942	41	30	8	0	1	2	copy fasta	WDR82	chr3	52249434	52283649
WDR83OS_chr19_12663073_12674415	1/1	c0001	321	395	93	67	168	17	48	copy fasta	WDR83OS	chr19	12663073	12674415
WDR83OS_chr19_12663073_12674415	0/0	c0002	321	4	3	1	0	0	0	copy fasta	WDR83OS	chr19	12663073	12674415
WDR83OS_chr19_12663073_12674415	0/0	c0003	321	4	0	3	0	1	0	copy fasta	WDR83OS	chr19	12663073	12674415
WDR83OS_chr19_12663073_12674415	0/0	c0004	321	1	0	1	0	0	0	copy fasta	WDR83OS	chr19	12663073	12674415
WDR83_chr19_12661807_12680832	1/0	c0001	948	407	94	64	182	18	48	copy fasta	WDR83	chr19	12661807	12680832
WDR83_chr19_12661807_12680832	0/0	c0002	948	5	0	5	0	0	0	copy fasta	WDR83	chr19	12661807	12680832
WDR83_chr19_12661807_12680832	0/0	c0003	948	1	0	1	0	0	0	copy fasta	WDR83	chr19	12661807	12680832
WDR83_chr19_12661807_12680832	0/1	c0004	948	1	0	0	0	0	0	copy fasta	WDR83	chr19	12661807	12680832
WDR83_chr19_12661807_12680832	0/0	c0005	948	1	1	0	0	0	0	copy fasta	WDR83	chr19	12661807	12680832
WDR83_chr19_12661807_12680832	0/0	c0006	948	1	1	0	0	0	0	copy fasta	WDR83	chr19	12661807	12680832
WDR86_chr7_151376124_151415038	0/1	c0001	1131	184	46	28	81	9	19	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0002	1131	65	23	16	19	0	7	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0003	1131	64	0	13	50	1	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	1/0	c0004	1131	38	8	9	0	4	16	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0005	1131	29	0	12	16	1	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0006	1131	22	1	1	19	1	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0007	1131	13	6	2	0	2	3	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0008	1131	11	0	0	11	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0009	1131	6	6	0	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0010	1131	3	0	0	3	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0011	1131	3	3	0	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0012	1131	3	0	0	2	0	1	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0013	1131	2	0	0	2	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0014	1131	2	0	2	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0015	1131	2	2	0	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0016	1131	2	2	0	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0017	1131	1	0	0	1	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0018	1131	1	0	0	0	0	1	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0019	1131	1	0	0	1	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0020	1131	1	0	0	1	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0021	1131	1	1	0	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0022	1131	1	0	1	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0023	1131	1	1	0	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0024	1131	1	1	0	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	c0025	1131	1	0	0	0	0	1	copy fasta	WDR86	chr7	151376124	151415038
WDR87_chr19_37879823_37911594	0/0	c0001	8739	102	19	10	64	1	8	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0002	8739	50	5	7	24	7	7	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0003	8736	31	5	6	20	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/1	c0004	8739	26	4	11	0	5	5	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	1/0	c0005	8739	25	2	10	9	1	2	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0006	8739	9	0	0	8	0	1	copy fasta	WDR87	chr19	37879823	37911594