JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR87_chr19_37879823_37911594	0/0	c0007	8739	8	8	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0008	8739	8	8	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0009	8739	7	0	0	7	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0010	8739	5	0	5	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0011	8721	4	0	1	0	0	3	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0012	8736	3	2	1	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0013	8739	3	0	0	3	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0014	8736	3	3	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0015	8739	3	0	0	0	3	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0016	8739	2	2	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0017	8739	2	0	2	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0018	8721	2	2	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0019	8739	2	0	0	2	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0020	8739	2	0	2	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0021	8739	1	0	0	0	0	1	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0022	8739	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0023	8736	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0024	8736	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0025	8736	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0026	8739	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0027	8739	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0028	8739	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0029	8739	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0030	8739	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0031	8739	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0032	8739	1	0	1	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0033	8739	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0034	8739	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0035	8739	1	0	0	0	1	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0036	8739	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0037	8739	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0038	8739	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0039	8739	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0040	8739	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0041	8739	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0042	8739	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0043	8739	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0044	8755	1	0	0	0	0	1	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0045	8739	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0046	8739	1	0	1	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0047	8739	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0048	8739	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0049	8739	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0050	8739	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0051	8739	1	1	0	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0052	8739	1	0	0	1	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	c0053	8739	1	0	1	0	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR88_chr19_33127114_33180799	0/0	c0001	1419	99	10	16	56	2	15	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	1/0	c0002	1419	96	18	21	35	7	14	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	c0003	1419	46	21	2	23	0	0	copy fasta	WDR88	chr19	33127114	33180799