JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BPIFB4_chr20_33074643_33116751	0/0	c0021	1845	1	1	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0022	1845	1	1	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0023	1845	1	1	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0024	1845	1	0	1	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0025	1845	1	1	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0026	1845	1	0	0	1	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0027	1845	1	0	1	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0028	1845	1	0	0	1	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0029	1845	1	0	0	1	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	c0030	1845	1	1	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB6_chr20_33026648_33049047	0/1	c0001	1362	178	28	34	87	5	23	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	1/0	c0002	1362	126	20	28	51	12	14	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	c0003	1362	18	16	1	1	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	c0004	1362	17	7	3	4	0	3	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	c0005	1362	14	12	2	0	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	c0006	1362	12	12	0	0	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	c0007	1362	6	0	0	6	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	c0008	1362	4	3	1	0	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	c0009	1362	2	0	1	0	1	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	c0010	1362	2	2	0	0	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	c0011	1362	1	0	0	1	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	c0012	1362	1	0	0	1	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	c0013	1362	1	0	0	1	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	c0014	1362	1	0	0	1	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	c0015	1362	1	0	0	1	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFC_chr22_32408845_32469446	0/1	c0001	1524	153	21	32	75	2	22	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	1/0	c0002	1524	129	2	31	69	11	15	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0003	1524	39	33	6	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0004	1524	28	4	2	22	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0005	1524	25	1	5	17	1	1	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0006	1524	16	6	3	1	3	3	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0007	1524	8	4	1	0	0	3	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0008	1524	5	5	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0009	1524	3	3	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0010	1524	3	3	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0011	1524	2	2	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0012	1524	2	2	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0013	1524	2	2	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0014	1524	1	0	0	0	0	1	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0015	1524	1	1	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0016	1524	1	1	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0017	1524	1	0	0	0	0	1	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0018	1524	1	0	0	0	1	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0019	1524	1	1	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	c0020	1524	1	1	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPI_chr20_38299156_38342505	0/1	c0001	1452	83	6	23	43	6	4	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0002	1452	63	29	12	7	5	10	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0003	1452	36	0	1	34	0	1	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0004	1452	30	12	5	9	0	4	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0005	1452	23	3	7	5	1	7	copy fasta	BPI	chr20	38299156	38342505