JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR88_chr19_33127114_33180799	0/0	c0004	1419	43	6	9	16	1	11	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	c0005	1419	37	20	11	4	0	2	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	c0006	1419	7	5	0	1	0	1	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	c0007	1419	6	6	0	0	0	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	c0008	1419	5	0	0	5	0	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	c0009	1419	4	0	2	0	2	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	c0010	1419	3	1	0	0	1	1	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	c0011	1419	2	2	0	0	0	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	c0012	1419	2	1	1	0	0	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	c0013	1419	1	1	0	0	0	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	c0014	1419	1	0	0	0	1	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	c0015	1419	1	0	0	1	0	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	c0016	1419	1	1	0	0	0	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	c0017	1419	1	0	0	1	0	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	c0018	1419	1	0	0	1	0	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/0	c0019	1419	1	0	0	1	0	0	copy fasta	WDR88	chr19	33127114	33180799
WDR88_chr19_33127114_33180799	0/1	c0020	1419	1	0	0	0	0	0	copy fasta	WDR88	chr19	33127114	33180799
WDR89_chr14_63592039_63646871	1/1	c0001	1164	283	92	56	89	10	34	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	c0002	1164	1	0	0	1	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR90_chr16_644365_672830	0/0	c0001	5247	116	5	20	70	4	17	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0002	5247	66	12	12	39	1	2	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	1/1	c0003	5247	49	2	15	8	7	15	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0004	5247	12	5	1	4	0	2	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0005	5247	11	10	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0006	5247	7	6	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0007	5247	5	5	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0008	5247	5	5	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0009	5247	5	5	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0010	5247	4	4	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0011	5247	4	0	0	4	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0012	5247	4	4	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0013	5247	3	0	0	1	0	2	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0014	5247	3	2	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0015	5247	3	3	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0016	5247	3	1	2	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0017	5247	3	0	0	3	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0018	5247	3	0	0	3	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0019	5247	2	2	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0020	5247	2	0	0	2	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0021	5247	2	2	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0022	5247	2	0	2	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0023	5247	2	2	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0024	5247	2	2	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0025	5247	2	0	2	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0026	5247	2	0	0	0	2	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0027	5247	2	2	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0028	5247	2	0	0	2	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0029	5247	2	0	0	0	0	2	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0030	5247	2	0	0	2	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0031	5247	2	0	0	2	0	0	copy fasta	WDR90	chr16	644365	672830