JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR90_chr16_644365_672830	0/0	c0032	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0033	5247	1	0	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0034	5247	1	0	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0035	5247	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0036	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0037	5247	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0038	5247	1	0	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0039	5247	1	0	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0040	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0041	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0042	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0043	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0044	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0045	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0046	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0047	5247	1	0	0	0	0	1	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0048	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0049	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0050	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0051	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0052	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0053	5247	1	0	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0054	5247	1	0	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0055	5247	1	0	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0056	5247	1	0	0	0	0	1	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0057	5247	1	0	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0058	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0059	5247	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0060	5247	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0061	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0062	5247	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0063	5247	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0064	5247	1	0	0	0	0	1	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0065	5247	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0066	5247	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0067	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0068	5247	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0069	5247	1	0	0	0	0	1	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0070	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0071	5247	1	0	1	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0072	5247	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0073	5247	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0074	5247	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	c0075	5247	1	0	0	1	0	0	copy fasta	WDR90	chr16	644365	672830
WDR91_chr7_135178839_135216526	0/0	c0001	2244	225	38	58	86	7	36	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	1/1	c0002	2244	96	36	14	32	3	9	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	c0003	2244	51	0	1	49	0	1	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	c0004	2244	12	12	0	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	c0005	2244	4	4	0	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	c0006	2244	1	0	0	1	0	0	copy fasta	WDR91	chr7	135178839	135216526