JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR91_chr7_135178839_135216526	0/0	c0007	2244	1	1	0	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	c0008	2244	1	0	0	1	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	c0009	2244	1	1	0	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	c0010	2244	1	0	0	0	0	1	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	c0011	2244	1	0	0	0	0	1	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	c0012	2244	1	0	0	1	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	c0013	2244	1	0	1	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR93_chr15_89685811_89748638	1/0	c0001	2061	145	26	25	73	4	16	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/1	c0002	2061	84	8	14	44	6	11	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0003	2061	48	12	19	0	4	13	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0004	2061	15	7	4	3	0	1	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0005	2061	8	1	0	7	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0006	2061	6	6	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0007	2061	5	3	2	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0008	2061	4	3	0	0	1	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0009	2061	4	4	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0010	2061	4	0	4	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0011	2061	3	3	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0012	2061	3	0	2	0	0	1	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0013	2061	3	3	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0014	2061	2	2	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0015	2061	2	2	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0016	2061	2	2	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0017	2061	2	2	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0018	2061	2	0	0	2	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0019	2061	2	2	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0020	2061	1	1	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0021	2061	1	0	0	0	1	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0022	2061	1	0	1	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0023	2061	1	0	1	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0024	2061	1	0	1	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0025	2061	1	0	0	1	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0026	2061	1	1	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	c0027	2061	1	0	1	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR97_chr8_144102739_144123328	0/1	c0001	4869	207	23	54	89	9	31	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0002	4869	11	0	6	0	3	2	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0003	4869	11	11	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0004	4868	10	0	0	10	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	1/0	c0005	4869	9	8	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0006	4869	7	4	3	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0007	4869	6	5	0	0	1	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0008	4869	6	6	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0009	4869	6	6	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0010	4869	5	5	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0011	4869	5	0	0	5	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0012	4869	4	4	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0013	4869	4	0	0	3	0	1	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0014	4869	3	2	1	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0015	4869	3	3	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0016	4869	3	0	3	0	0	0	copy fasta	WDR97	chr8	144102739	144123328