JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WDR97_chr8_144102739_144123328	0/0	c0017	4869	3	2	1	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0018	4869	3	0	2	0	1	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0019	4869	2	2	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0020	4869	2	2	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0021	4869	2	0	2	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0022	4869	2	2	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0023	4869	2	0	2	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0024	4869	2	0	0	0	0	2	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0025	4869	2	0	0	2	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0026	4869	2	0	0	2	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0027	4869	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0028	4869	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0029	4869	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0030	4869	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0031	4869	1	0	1	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0032	4869	1	0	1	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0033	4869	1	0	0	0	0	1	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0034	4869	1	0	1	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0035	4869	1	0	0	0	1	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0036	4869	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0037	4869	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0038	4869	1	0	1	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0039	4869	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0040	4869	1	0	0	0	0	1	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0041	4869	1	0	0	0	0	1	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0042	4869	1	0	0	0	0	1	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0043	4890	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0044	4869	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0045	4869	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0046	4869	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0047	4869	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0048	4869	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0049	4887	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0050	4869	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0051	4869	1	0	0	0	1	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	c0052	4869	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDSUB1_chr2_159230798_159291703	1/1	c0001	1431	166	15	30	87	6	26	copy fasta	WDSUB1	chr2	159230798	159291703
WDSUB1_chr2_159230798_159291703	0/0	c0002	1431	35	0	20	6	5	4	copy fasta	WDSUB1	chr2	159230798	159291703
WDSUB1_chr2_159230798_159291703	0/0	c0003	1431	19	19	0	0	0	0	copy fasta	WDSUB1	chr2	159230798	159291703
WDSUB1_chr2_159230798_159291703	0/0	c0004	1431	11	8	0	0	1	2	copy fasta	WDSUB1	chr2	159230798	159291703
WDSUB1_chr2_159230798_159291703	0/0	c0005	1431	8	8	0	0	0	0	copy fasta	WDSUB1	chr2	159230798	159291703
WDSUB1_chr2_159230798_159291703	0/0	c0006	1431	7	0	0	7	0	0	copy fasta	WDSUB1	chr2	159230798	159291703
WDSUB1_chr2_159230798_159291703	0/0	c0007	1431	6	6	0	0	0	0	copy fasta	WDSUB1	chr2	159230798	159291703
WDTC1_chr1_27229632_27313636	1/1	c0001	2034	205	74	38	54	12	25	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	c0002	2034	4	0	0	4	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	c0003	2034	2	1	1	0	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	c0004	2034	1	0	1	0	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	c0005	2034	1	0	0	0	0	1	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	c0006	2034	1	1	0	0	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WEE1_chr11_9568670_9594985	1/0	c0001	1941	202	44	33	114	0	10	copy fasta	WEE1	chr11	9568670	9594985