JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WEE1_chr11_9568670_9594985	0/1	c0002	1941	116	27	25	34	10	19	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	c0003	1941	63	8	18	27	2	8	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	c0004	1941	33	2	1	29	0	1	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	c0005	1941	11	4	4	2	0	1	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	c0006	1941	3	2	1	0	0	0	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	c0007	1941	2	0	0	2	0	0	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	c0008	1941	2	0	0	0	1	1	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	c0009	1941	2	2	0	0	0	0	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	c0010	1941	2	2	0	0	0	0	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	c0011	1941	1	0	0	1	0	0	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	c0012	1941	1	0	0	0	0	1	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	c0013	1941	1	0	0	1	0	0	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	c0014	1941	1	0	0	0	1	0	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	c0015	1941	1	0	0	0	0	1	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	c0016	1941	1	1	0	0	0	0	copy fasta	WEE1	chr11	9568670	9594985
WEE2_chr7_141703353_141736271	0/1	c0001	1704	188	68	28	57	8	26	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	c0002	1704	173	12	33	108	6	14	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	c0003	1704	13	0	4	9	0	0	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	c0004	1704	6	6	0	0	0	0	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	c0005	1704	5	5	0	0	0	0	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	c0006	1704	4	0	0	4	0	0	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	c0007	1704	1	0	0	0	0	1	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	c0008	1704	1	0	0	0	0	1	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	c0009	1704	1	0	1	0	0	0	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	c0010	1704	1	1	0	0	0	0	copy fasta	WEE2	chr7	141703353	141736271
WFDC10A_chr20_45624739_45636196	1/1	c0001	240	301	66	57	132	9	35	copy fasta	WFDC10A	chr20	45624739	45636196
WFDC10A_chr20_45624739_45636196	0/0	c0002	240	100	16	17	57	5	5	copy fasta	WFDC10A	chr20	45624739	45636196
WFDC10A_chr20_45624739_45636196	0/0	c0003	240	4	4	0	0	0	0	copy fasta	WFDC10A	chr20	45624739	45636196
WFDC10A_chr20_45624739_45636196	0/0	c0004	240	3	3	0	0	0	0	copy fasta	WFDC10A	chr20	45624739	45636196
WFDC10A_chr20_45624739_45636196	0/0	c0005	240	1	0	0	1	0	0	copy fasta	WFDC10A	chr20	45624739	45636196
WFDC10A_chr20_45624739_45636196	0/0	c0006	240	1	1	0	0	0	0	copy fasta	WFDC10A	chr20	45624739	45636196
WFDC10B_chr20_45679651_45710019	0/0	c0001	222	405	90	55	213	9	38	copy fasta	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	1/1	c0002	222	34	2	17	0	5	8	copy fasta	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	c0003	222	1	0	0	1	0	0	copy fasta	WFDC10B	chr20	45679651	45710019
WFDC11_chr20_45643563_45675239	1/1	c0001	264	418	94	80	190	14	38	copy fasta	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	c0002	264	1	0	0	0	0	1	copy fasta	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	c0003	264	1	0	0	0	0	1	copy fasta	WFDC11	chr20	45643563	45675239
WFDC12_chr20_45118425_45129465	1/1	c0001	336	418	93	74	193	14	42	copy fasta	WFDC12	chr20	45118425	45129465
WFDC12_chr20_45118425_45129465	0/0	c0002	336	1	0	0	1	0	0	copy fasta	WFDC12	chr20	45118425	45129465
WFDC12_chr20_45118425_45129465	0/0	c0003	336	1	1	0	0	0	0	copy fasta	WFDC12	chr20	45118425	45129465
WFDC13_chr20_45697038_45713817	1/1	c0001	282	441	89	69	223	16	42	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	c0002	282	3	0	3	0	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	c0003	282	3	3	0	0	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	c0004	282	2	2	0	0	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	c0005	282	1	0	0	1	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	c0006	282	1	0	1	0	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	c0007	282	1	0	1	0	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC1_chr16_84289878_84334844	1/1	c0001	663	332	55	59	166	14	36	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	c0002	663	117	24	20	55	4	14	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	c0003	663	6	5	1	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844