JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WFDC1_chr16_84289878_84334844	0/0	c0004	663	3	3	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	c0005	663	2	2	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	c0006	663	2	2	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	c0007	663	2	2	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	c0008	663	1	0	0	1	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	c0009	663	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	c0010	663	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	c0011	663	1	0	0	1	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	c0012	663	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	c0013	663	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	c0014	663	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	c0015	663	1	0	0	1	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC2_chr20_45464753_45486532	1/1	c0001	375	415	92	70	203	10	38	copy fasta	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	c0002	429	1	0	0	1	0	0	copy fasta	WFDC2	chr20	45464753	45486532
WFDC3_chr20_45769213_45796883	0/1	c0001	696	272	56	54	122	14	25	copy fasta	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	1/0	c0002	696	116	30	12	56	4	13	copy fasta	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	c0003	696	8	1	5	0	0	2	copy fasta	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	c0004	696	5	4	1	0	0	0	copy fasta	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	c0005	696	4	4	0	0	0	0	copy fasta	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	c0006	696	3	3	0	0	0	0	copy fasta	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	c0007	696	1	0	0	1	0	0	copy fasta	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	c0008	696	1	0	0	1	0	0	copy fasta	WFDC3	chr20	45769213	45796883
WFDC5_chr20_45104463_45120174	1/1	c0001	372	390	89	67	176	12	44	copy fasta	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	c0002	372	25	2	7	10	2	4	copy fasta	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	c0003	372	8	0	0	8	0	0	copy fasta	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	c0004	372	4	4	0	0	0	0	copy fasta	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	c0005	372	1	1	0	0	0	0	copy fasta	WFDC5	chr20	45104463	45120174
WFDC6_chr20_45529196_45544482	1/1	c0001	261	443	94	84	206	14	43	copy fasta	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	c0002	261	1	0	0	0	0	1	copy fasta	WFDC6	chr20	45529196	45544482
WFDC8_chr20_45546762_45584284	1/0	c0001	726	267	46	41	140	6	33	copy fasta	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/1	c0002	726	88	28	28	20	5	6	copy fasta	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	c0003	726	47	13	2	29	3	0	copy fasta	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	c0004	726	3	3	0	0	0	0	copy fasta	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	c0005	726	1	0	1	0	0	0	copy fasta	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	c0006	726	1	0	0	1	0	0	copy fasta	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	c0007	726	1	0	0	0	0	1	copy fasta	WFDC8	chr20	45546762	45584284
WFDC9_chr20_45602939_45636284	1/1	c0001	270	247	59	49	106	6	25	copy fasta	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	c0002	270	150	31	22	76	4	17	copy fasta	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	c0003	270	1	0	1	0	0	0	copy fasta	WFDC9	chr20	45602939	45636284
WFIKKN1_chr16_625985_639117	1/1	c0001	1647	165	48	42	53	8	12	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0002	1647	135	1	22	87	3	22	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0003	1647	71	30	9	14	3	15	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0004	1647	3	3	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0005	1647	3	3	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0006	1647	2	0	0	2	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0007	1647	2	0	2	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0008	1647	2	2	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0009	1647	2	2	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0010	1647	2	0	0	2	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0011	1647	2	1	1	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117