JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WFIKKN1_chr16_625985_639117	0/0	c0012	1647	1	0	1	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0013	1647	1	0	1	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0014	1647	1	0	1	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0015	1647	1	1	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0016	1647	1	1	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0017	1647	1	0	0	1	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0018	1647	1	1	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0019	1647	1	1	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0020	1647	1	1	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0021	1647	1	0	0	1	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0022	1647	1	0	1	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0023	1647	1	0	0	1	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0024	1647	1	0	0	1	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0025	1647	1	0	0	0	0	1	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	c0026	1647	1	1	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN2_chr17_50830586_50847353	1/0	c0001	1731	204	51	29	103	8	12	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/1	c0002	1731	136	17	33	64	7	14	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0003	1731	24	9	1	3	0	11	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0004	1731	12	0	1	9	1	1	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0005	1731	8	6	1	1	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0006	1731	8	1	5	0	2	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0007	1731	7	7	0	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0008	1731	3	2	1	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0009	1731	3	0	3	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0010	1731	2	1	0	0	0	1	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0011	1731	2	0	0	2	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0012	1731	1	1	0	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0013	1731	1	0	0	1	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0014	1731	1	0	0	1	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0015	1731	1	0	1	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0016	1731	1	0	0	1	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0017	1731	1	0	0	0	0	1	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0018	1731	1	1	0	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0019	1731	1	0	1	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	c0020	1731	1	0	0	1	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFS1_chr4_6264850_6308265	0/1	c0001	2673	155	3	31	90	9	21	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0002	2673	43	36	5	2	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	1/0	c0003	2673	30	1	17	1	4	6	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0004	2673	21	5	7	5	1	3	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0005	2673	18	8	0	9	0	1	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0006	2673	12	0	1	11	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0007	2673	11	0	0	10	0	1	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0008	2673	7	0	0	7	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0009	2673	6	6	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0010	2673	6	0	3	0	1	2	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0011	2673	5	5	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0012	2673	5	0	0	0	0	5	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0013	2673	5	5	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0014	2673	4	4	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0015	2673	3	3	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265