JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WFS1_chr4_6264850_6308265	0/0	c0016	2673	3	0	0	3	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0017	2673	3	3	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0018	2673	2	1	1	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0019	2673	2	0	0	2	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0020	2673	2	1	1	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0021	2673	2	0	0	2	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0022	2673	2	0	0	2	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0023	2673	2	0	0	2	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0024	2673	2	0	2	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0025	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0026	2673	1	0	0	0	0	1	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0027	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0028	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0029	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0030	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0031	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0032	2673	1	0	0	0	0	1	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0033	2673	1	0	1	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0034	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0035	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0036	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0037	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0038	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0039	2673	1	0	0	0	0	1	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0040	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0041	2673	1	0	0	0	0	1	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0042	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0043	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0044	2673	1	0	0	0	0	1	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0045	2673	1	0	1	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0046	2673	1	0	0	0	0	1	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0047	2673	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0048	2673	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0049	2673	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0050	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0051	2673	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0052	2673	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0053	2673	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0054	2673	1	0	0	0	1	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0055	2673	1	0	1	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0056	2673	1	0	1	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0057	2673	1	0	0	0	0	1	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0058	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0059	2673	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0060	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0061	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0062	2673	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	c0063	2673	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WHAMM_chr15_82804628_82841108	1/1	c0001	2430	237	66	45	100	7	17	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0002	2430	75	9	16	38	5	7	copy fasta	WHAMM	chr15	82804628	82841108