JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WHAMM_chr15_82804628_82841108	0/0	c0003	2430	52	3	6	34	1	8	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0004	2430	23	5	12	0	4	2	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0005	2430	14	1	0	13	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0006	2431	5	3	1	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0007	2431	4	0	1	3	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0008	2430	3	3	0	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0009	2421	3	3	0	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0010	2431	2	0	0	2	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0011	2430	2	0	0	0	0	2	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0012	2430	2	2	0	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0013	2430	2	0	0	2	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0014	2430	1	0	0	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0015	2430	1	0	0	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0016	2430	1	0	0	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0017	2430	1	1	0	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0018	2430	1	0	0	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0019	2430	1	0	0	0	1	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0020	2430	1	0	1	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	c0021	2430	1	0	0	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHRN_chr9_114397080_114510473	0/1	c0001	2724	53	0	12	35	0	5	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0002	2724	53	8	8	27	2	8	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0003	2724	45	10	9	21	2	3	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0004	2724	23	4	3	15	0	1	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0005	2724	17	13	1	1	0	2	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	1/0	c0006	2724	17	6	1	5	1	3	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0007	2724	16	5	6	2	1	2	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0008	2724	12	8	1	3	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0009	2724	10	0	7	0	2	1	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0010	2724	10	5	2	0	2	1	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0011	2724	9	0	5	1	3	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0012	2724	8	2	6	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0013	2724	6	0	0	5	0	1	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0014	2724	5	0	5	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0015	2724	5	0	0	5	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0016	2724	5	5	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0017	2724	2	2	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0018	2724	2	0	2	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0019	2724	2	2	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0020	2724	2	0	0	2	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0021	2724	2	2	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0022	2724	2	1	1	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0023	2724	2	2	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0024	2724	2	1	0	0	1	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0025	2724	1	0	0	1	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0026	2724	1	1	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0027	2724	1	0	0	1	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0028	2724	1	0	0	1	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0029	2724	1	0	0	1	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0030	2724	1	0	1	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0031	2724	1	0	0	0	0	1	copy fasta	WHRN	chr9	114397080	114510473