JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WHRN_chr9_114397080_114510473	0/0	c0032	2724	1	0	0	1	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0033	2724	1	0	0	0	0	1	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0034	2724	1	0	0	1	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0035	2724	1	1	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0036	2724	1	1	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0037	2724	1	0	0	1	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0038	2724	1	1	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0039	2724	1	0	1	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0040	2724	1	1	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0041	2724	1	0	0	0	0	1	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0042	2724	1	1	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0043	2724	1	0	1	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	c0044	2724	1	0	0	1	0	0	copy fasta	WHRN	chr9	114397080	114510473
WIF1_chr12_65045626_65126305	0/1	c0001	1140	296	66	45	140	10	34	copy fasta	WIF1	chr12	65045626	65126305
WIF1_chr12_65045626_65126305	1/0	c0002	1140	44	19	16	0	3	5	copy fasta	WIF1	chr12	65045626	65126305
WIF1_chr12_65045626_65126305	0/0	c0003	1140	30	0	6	20	0	4	copy fasta	WIF1	chr12	65045626	65126305
WIF1_chr12_65045626_65126305	0/0	c0004	1140	4	0	3	0	1	0	copy fasta	WIF1	chr12	65045626	65126305
WIF1_chr12_65045626_65126305	0/0	c0005	1140	1	0	0	0	0	1	copy fasta	WIF1	chr12	65045626	65126305
WIF1_chr12_65045626_65126305	0/0	c0006	1140	1	0	0	1	0	0	copy fasta	WIF1	chr12	65045626	65126305
WIF1_chr12_65045626_65126305	0/0	c0007	1140	1	1	0	0	0	0	copy fasta	WIF1	chr12	65045626	65126305
WIF1_chr12_65045626_65126305	0/0	c0008	1140	1	0	0	1	0	0	copy fasta	WIF1	chr12	65045626	65126305
WIPF1_chr2_174554574_174602804	0/1	c0001	1512	237	64	49	87	11	25	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	1/0	c0002	1512	30	17	5	1	0	6	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	c0003	1512	25	7	3	6	1	8	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	c0004	1512	2	2	0	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	c0005	1512	2	2	0	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	c0006	1512	1	0	0	0	0	1	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	c0007	1512	1	1	0	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	c0008	1512	1	0	1	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	c0009	1512	1	1	0	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF2_chr17_40214304_40289136	1/1	c0001	1323	305	78	52	136	10	27	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	c0002	1323	2	2	0	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	c0003	1323	2	2	0	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	c0004	1323	1	0	0	0	1	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	c0005	1323	1	0	0	1	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	c0006	1323	1	0	0	0	1	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	c0007	1323	1	0	0	1	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	c0008	1323	1	0	0	0	0	1	copy fasta	WIPF2	chr17	40214304	40289136
WIPF3_chr7_29801508_29922061	1/1	c0001	1452	172	53	30	63	5	19	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0002	1452	33	13	11	3	3	3	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0003	1452	17	0	0	15	0	2	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0004	1452	10	0	0	9	0	1	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0005	1452	4	4	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0006	1452	4	0	4	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0007	1452	3	3	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0008	1452	3	3	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0009	1452	3	0	0	1	0	2	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0010	1452	2	0	0	2	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0011	1452	2	0	0	2	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0012	1437	2	2	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061