JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BPI_chr20_38299156_38342505	1/0	c0006	1452	19	2	2	10	0	4	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0007	1452	19	0	2	9	2	6	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0008	1452	15	0	0	15	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0009	1452	14	1	3	8	0	2	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0010	1452	14	0	1	12	0	1	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0011	1452	13	2	7	0	3	1	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0012	1452	9	7	2	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0013	1452	8	2	0	6	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0014	1452	6	4	0	2	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0015	1452	5	0	0	4	0	1	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0016	1452	5	0	0	5	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0017	1452	4	0	0	4	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0018	1452	4	4	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0019	1452	4	0	0	4	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0020	1452	4	0	4	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0021	1452	3	3	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0022	1452	3	0	0	3	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0023	1452	2	0	0	2	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0024	1452	2	2	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0025	1452	2	0	0	2	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0026	1452	2	2	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0027	1452	2	2	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0028	1452	2	0	0	2	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0029	1452	2	0	2	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0030	1452	2	2	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0031	1452	1	0	0	0	1	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0032	1452	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0033	1452	1	0	0	0	0	1	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0034	1452	1	1	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0035	1452	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0036	1452	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0037	1452	1	1	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0038	1452	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0039	1452	1	1	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0040	1452	1	1	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0041	1452	1	0	0	0	0	1	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0042	1452	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0043	1452	1	0	1	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0044	1452	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0045	1452	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0046	1452	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0047	1452	1	1	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0048	1452	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0049	1452	1	1	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0050	1452	1	1	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0051	1452	1	1	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0052	1452	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0053	1452	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0054	1452	1	0	0	0	0	1	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	c0055	1452	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505