JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WIPF3_chr7_29801508_29922061	0/0	c0013	1452	2	2	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0014	1452	2	0	2	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0015	1452	2	2	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0016	1452	2	0	2	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0017	1452	2	2	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0018	1452	1	1	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0019	1452	1	1	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0020	1452	1	1	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0021	1452	1	0	0	1	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0022	1452	1	0	1	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0023	1452	1	1	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0024	1452	1	0	0	0	0	1	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0025	1452	1	0	0	1	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0026	1452	1	0	1	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0027	1452	1	0	0	1	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	c0028	1452	1	0	1	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPI1_chr17_68416281_68462496	0/1	c0001	1341	282	73	53	111	11	33	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	1/0	c0002	1341	130	16	21	74	7	11	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	c0003	1341	2	2	0	0	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	c0004	1341	2	0	0	2	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	c0005	1341	1	0	0	1	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	c0006	1341	1	1	0	0	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	c0007	1341	1	1	0	0	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	c0008	1341	1	1	0	0	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI2_chr7_5185233_5238840	0/0	c0001	1365	344	70	62	166	9	37	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/1	c0002	1365	13	0	7	0	1	4	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	c0003	1365	9	7	1	0	1	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	c0004	1365	9	7	2	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	c0005	1365	4	1	1	0	1	1	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	1/0	c0006	1365	2	0	1	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	c0007	1365	2	0	2	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	c0008	1365	2	2	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	c0009	1365	2	2	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	c0010	1365	1	1	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	c0011	1365	1	0	0	1	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	c0012	1365	1	1	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	c0013	1365	1	1	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	c0014	1365	1	0	0	1	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIZ_chr19_15414978_15454956	0/1	c0001	5670	120	35	34	35	2	13	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	1/0	c0002	5670	39	16	9	0	3	10	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0003	5670	9	9	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0004	5670	6	6	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0005	5670	3	3	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0006	5670	2	2	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0007	5670	2	0	1	0	0	1	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0008	5670	1	0	1	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0009	5670	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0010	5670	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0011	5670	1	0	0	1	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0012	5670	1	0	0	0	0	1	copy fasta	WIZ	chr19	15414978	15454956