JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WIZ_chr19_15414978_15454956	0/0	c0013	5670	1	0	1	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0014	5670	1	0	0	0	1	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0015	5670	1	0	0	0	0	1	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0016	5670	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0017	5670	1	0	0	1	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0018	5670	1	0	0	1	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0019	5670	1	0	1	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0020	5670	1	0	1	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0021	5670	1	0	1	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0022	5670	1	0	0	1	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0023	5670	1	0	0	1	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0024	5670	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0025	5670	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0026	5670	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0027	5670	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0028	5670	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0029	5670	1	0	1	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0030	5670	1	0	0	0	0	1	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0031	5670	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0032	5670	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0033	5670	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	c0034	5670	1	0	0	0	0	1	copy fasta	WIZ	chr19	15414978	15454956
WLS_chr1_68120360_68237523	1/0	c0001	1626	132	48	17	56	0	10	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	c0002	1626	106	17	26	49	5	9	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/1	c0003	1626	61	7	19	21	2	11	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	c0004	1626	28	6	4	14	1	3	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	c0005	1626	2	2	0	0	0	0	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	c0006	1626	1	1	0	0	0	0	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	c0007	1626	1	0	0	1	0	0	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	c0008	1626	1	0	0	0	0	1	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	c0009	1626	1	1	0	0	0	0	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	c0010	1626	1	0	0	1	0	0	copy fasta	WLS	chr1	68120360	68237523
WNK1_chr12_747579_916452	0/1	c0001	7149	79	19	24	25	5	5	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0002	7149	46	22	10	5	0	9	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0003	7149	26	6	3	10	2	5	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0004	7149	21	0	4	9	2	6	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0005	7149	21	0	5	12	3	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0006	7149	15	1	4	10	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0007	7149	8	6	2	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0008	7149	6	0	6	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0009	7149	6	1	1	4	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0010	7149	5	5	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0011	7149	5	5	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0012	7149	4	4	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0013	7149	4	0	1	2	0	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0014	7149	3	0	0	3	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0015	7149	3	3	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0016	7149	2	0	2	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0017	7149	2	2	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0018	7149	2	2	0	0	0	0	copy fasta	WNK1	chr12	747579	916452