JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WNK1_chr12_747579_916452	0/0	c0019	7149	1	0	0	0	0	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0020	7149	1	0	0	1	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0021	7149	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0022	7149	1	0	0	0	0	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0023	7149	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0024	7149	1	0	0	0	0	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0025	7149	1	0	0	0	0	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0026	7149	1	0	0	1	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0027	7149	1	0	1	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0028	7149	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0029	7149	1	0	0	1	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0030	7149	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0031	7149	1	0	0	0	0	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0032	7149	1	0	1	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0033	7149	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0034	7149	1	0	0	1	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0035	7149	1	0	0	1	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0036	7149	1	0	0	1	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0037	7149	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0038	7149	1	0	0	1	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0039	7149	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0040	7149	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0041	7149	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0042	7149	1	0	0	1	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	1/0	c0043	7149	1	0	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	c0044	7149	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK2_chr9_93179139_93325569	0/0	c0001	6654	53	7	11	24	6	5	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0002	6654	44	8	6	25	1	4	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0003	6654	38	4	15	14	3	2	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/1	c0004	6654	20	9	6	0	3	1	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0005	6654	15	0	5	10	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0006	6654	13	4	1	8	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0007	6654	13	0	0	3	0	10	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0008	6654	11	0	3	5	0	3	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	1/0	c0009	6654	10	1	2	0	2	4	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0010	6654	8	0	7	0	1	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0011	6654	5	5	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0012	6618	5	4	1	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0013	6654	5	0	0	5	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0014	6654	5	4	1	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0015	6654	4	4	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0016	6654	4	0	0	4	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0017	6654	3	0	0	3	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0018	6654	3	0	0	3	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0019	6618	3	3	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0020	6654	3	2	1	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0021	6654	2	2	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0022	6654	2	0	0	1	0	1	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0023	6672	2	2	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0024	6654	2	2	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569