JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WNK2_chr9_93179139_93325569	0/0	c0025	6654	2	0	0	1	0	1	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0026	6654	2	0	1	0	0	1	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0027	6618	2	2	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0028	6654	2	2	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0029	6654	1	0	0	1	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0030	6618	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0031	6654	1	0	0	1	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0032	6654	1	0	1	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0033	6654	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0034	6654	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0035	6654	1	0	1	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0036	6654	1	0	0	0	0	1	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0037	6618	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0038	6654	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0039	6654	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0040	6654	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0041	6654	1	0	0	1	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0042	6654	1	0	0	1	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0043	6654	1	0	0	0	0	1	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0044	6654	1	0	0	1	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0045	6600	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0046	6654	1	0	1	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0047	6654	1	0	1	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0048	6654	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0049	6654	1	0	0	0	0	1	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0050	6654	1	0	0	1	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0051	6654	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0052	6654	1	0	0	1	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0053	6618	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0054	6654	1	0	0	0	0	1	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0055	6654	1	0	0	1	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0056	6654	1	0	1	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0057	6654	1	0	0	0	0	1	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0058	6654	1	0	1	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0059	6654	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0060	6654	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0061	6654	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0062	6654	1	1	0	0	0	0	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	c0063	6654	1	0	0	0	0	1	copy fasta	WNK2	chr9	93179139	93325569
WNK3_chrX_54187823_54363046	1/1	c0001	5403	140	35	22	58	5	18	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	c0002	5403	6	6	0	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	c0003	5403	4	0	0	4	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	c0004	5403	1	0	0	1	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	c0005	5403	1	0	1	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	c0006	5404	1	0	0	1	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	c0007	5403	1	1	0	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	c0008	5403	1	0	0	1	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	c0009	5403	1	0	0	1	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK4_chr17_42775610_42802066	1/1	c0001	3732	211	49	49	82	6	23	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0002	3732	12	3	0	6	0	3	copy fasta	WNK4	chr17	42775610	42802066