JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WNK4_chr17_42775610_42802066	0/0	c0003	3732	9	8	1	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0004	3732	6	6	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0005	3732	5	5	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0006	3732	4	4	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0007	3732	3	3	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0008	3732	2	2	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0009	3732	1	1	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0010	3732	1	0	1	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0011	3732	1	0	0	0	1	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0012	3732	1	0	0	1	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0013	3732	1	0	0	0	1	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0014	3732	1	0	0	0	0	1	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0015	3732	1	0	0	1	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0016	3732	1	1	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0017	3732	1	1	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0018	3732	1	0	0	0	0	1	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0019	3732	1	0	0	1	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0020	3732	1	0	0	1	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0021	3732	1	1	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0022	3732	1	0	1	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0023	3732	1	0	0	0	0	1	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0024	3732	1	0	0	0	0	1	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0025	3732	1	0	0	1	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0026	3732	1	0	0	0	0	1	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0027	3732	1	0	0	0	0	1	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0028	3732	1	1	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0029	3732	1	1	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	c0030	3732	1	0	0	1	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNT10A_chr2_218875852_218898928	1/1	c0001	1254	321	83	48	146	6	36	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	c0002	1254	4	0	4	0	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	c0003	1254	3	3	0	0	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	c0004	1254	2	0	0	2	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	c0005	1254	1	1	0	0	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	c0006	1254	1	0	0	1	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	c0007	1254	1	0	1	0	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	c0008	1254	1	1	0	0	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	c0009	1254	1	0	1	0	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	c0010	1254	1	0	0	1	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	c0011	1254	1	0	0	0	0	1	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	c0012	1254	1	0	0	1	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	c0013	1254	1	0	0	0	0	1	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	c0014	1254	1	0	0	1	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10B_chr12_48960340_48976735	1/1	c0001	1170	245	84	37	82	13	27	copy fasta	WNT10B	chr12	48960340	48976735
WNT10B_chr12_48960340_48976735	0/0	c0002	1170	133	8	34	77	3	11	copy fasta	WNT10B	chr12	48960340	48976735
WNT10B_chr12_48960340_48976735	0/0	c0003	1170	2	0	2	0	0	0	copy fasta	WNT10B	chr12	48960340	48976735
WNT10B_chr12_48960340_48976735	0/0	c0004	1170	1	0	0	1	0	0	copy fasta	WNT10B	chr12	48960340	48976735
WNT10B_chr12_48960340_48976735	0/0	c0005	1170	1	0	1	0	0	0	copy fasta	WNT10B	chr12	48960340	48976735
WNT11_chr11_76181325_76211502	1/1	c0001	1065	315	76	53	137	13	34	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	c0002	1065	106	10	29	50	5	12	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	c0003	1065	3	3	0	0	0	0	copy fasta	WNT11	chr11	76181325	76211502