JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WNT4_chr1_22112313_22148097	0/0	c0002	1056	12	7	2	1	2	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	c0003	1056	9	7	2	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	c0004	1056	2	1	1	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	c0005	1056	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	c0006	1056	1	0	1	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	c0007	1056	1	0	1	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	c0008	1056	1	0	0	0	0	1	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	c0009	1056	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT5A_chr3_55460715_55492306	1/1	c0001	1143	357	93	71	131	16	44	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	c0002	1143	8	1	7	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	c0003	1143	1	0	0	1	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5B_chr12_1624231_1652212	1/1	c0001	1080	444	95	83	201	14	49	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	c0002	1080	2	1	1	0	0	0	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	c0003	1080	2	0	0	2	0	0	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	c0004	1080	1	0	0	1	0	0	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	c0005	1080	1	0	0	0	0	1	copy fasta	WNT5B	chr12	1624231	1652212
WNT6_chr2_218854805_218879233	1/1	c0001	1098	332	78	58	150	7	37	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	c0002	1098	11	10	1	0	0	0	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	c0003	1098	5	0	5	0	0	0	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	c0004	1098	4	1	2	0	1	0	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	c0005	1098	3	3	0	0	0	0	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	c0006	1098	1	0	0	0	0	1	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	c0007	1098	1	0	0	1	0	0	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	c0008	1098	1	0	0	1	0	0	copy fasta	WNT6	chr2	218854805	218879233
WNT7A_chr3_13811258_13885071	1/1	c0001	1050	242	65	61	75	12	27	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	c0002	1050	91	2	13	67	0	9	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	c0003	1050	10	10	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	c0004	1050	3	3	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	c0005	1050	2	2	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	c0006	1050	1	1	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	c0007	1050	1	1	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	c0008	1050	1	1	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	c0009	1050	1	1	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	c0010	1050	1	1	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	c0011	1050	1	1	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7B_chr22_45915366_45982162	1/1	c0001	1050	323	71	68	119	18	45	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	c0002	1050	9	8	1	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	c0003	1050	4	4	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	c0004	1050	2	2	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	c0005	1050	1	0	0	1	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	c0006	1050	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	c0007	1050	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	c0008	1050	1	0	0	0	0	1	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	c0009	1050	1	0	0	1	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	c0010	1050	1	0	0	1	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	c0011	1050	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	c0012	1050	1	0	1	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	c0013	1050	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	c0014	1050	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	c0015	1050	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162