JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WNT7B_chr22_45915366_45982162	0/0	c0016	1050	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT8A_chr5_138079033_138096541	1/1	c0001	1110	221	61	46	78	13	21	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	c0002	1110	174	32	28	92	1	21	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	c0003	1110	2	0	2	0	0	0	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	c0004	1110	1	0	1	0	0	0	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	c0005	1110	1	0	1	0	0	0	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	c0006	1110	1	0	1	0	0	0	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	c0007	1110	1	1	0	0	0	0	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	c0008	1110	1	0	1	0	0	0	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	c0009	1110	1	0	0	1	0	0	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	c0010	1110	1	0	0	1	0	0	copy fasta	WNT8A	chr5	138079033	138096541
WNT8B_chr10_100458009_100488744	1/0	c0001	1056	246	60	49	98	11	27	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/1	c0002	1056	79	19	11	36	5	7	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/0	c0003	1056	5	3	0	2	0	0	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/0	c0004	1056	2	0	0	0	0	2	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/0	c0005	1056	1	1	0	0	0	0	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/0	c0006	1056	1	1	0	0	0	0	copy fasta	WNT8B	chr10	100458009	100488744
WNT9A_chr1_227913656_227952932	0/1	c0001	1098	227	61	44	94	11	16	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	1/0	c0002	1098	121	9	23	67	6	15	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0003	1098	24	4	0	15	0	5	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0004	1098	14	14	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0005	1098	3	0	2	0	1	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0006	1098	2	2	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0007	1098	2	0	0	0	0	2	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0008	1098	1	0	1	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0009	1098	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0010	1098	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0011	1098	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0012	1098	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0013	1098	1	0	0	0	0	1	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0014	1098	1	0	0	0	0	1	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0015	1098	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0016	1098	1	0	0	0	0	1	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0017	1098	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0018	1098	1	0	0	0	0	1	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0019	1098	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	c0020	1098	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9B_chr17_46846583_46885560	0/1	c0001	1074	210	45	45	88	7	24	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0002	1074	109	4	26	62	5	12	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0003	1074	28	27	1	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0004	1074	12	0	1	8	0	3	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0005	1074	4	4	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0006	1074	4	4	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0007	1074	3	0	1	0	0	2	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0008	1074	2	0	0	2	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0009	1074	2	2	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0010	1074	1	0	0	0	1	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0011	1074	1	1	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0012	1074	1	1	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0013	1074	1	0	0	1	0	0	copy fasta	WNT9B	chr17	46846583	46885560