JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WNT9B_chr17_46846583_46885560	0/0	c0014	1074	1	0	0	1	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0015	1074	1	1	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0016	1074	1	0	0	1	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0017	1074	1	1	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0018	1074	1	0	1	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0019	1074	1	0	0	1	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0020	1074	1	0	0	0	0	1	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0021	1074	1	0	1	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	c0022	1074	1	0	0	0	1	0	copy fasta	WNT9B	chr17	46846583	46885560
WRAP53_chr17_7683477_7708502	1/1	c0001	1647	184	8	45	100	10	19	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	c0002	1647	88	23	9	43	1	12	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	c0003	1647	37	30	5	0	1	1	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	c0004	1647	35	3	6	17	2	7	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	c0005	1647	13	13	0	0	0	0	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	c0006	1647	6	0	0	6	0	0	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	c0007	1647	5	4	1	0	0	0	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	c0008	1647	3	3	0	0	0	0	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	c0009	1647	3	2	1	0	0	0	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	c0010	1647	2	0	0	0	0	2	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	c0011	1647	2	0	1	0	0	1	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	c0012	1647	1	0	0	1	0	0	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	c0013	1647	1	1	0	0	0	0	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	c0014	1647	1	0	0	1	0	0	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	c0015	1647	1	1	0	0	0	0	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	c0016	1647	1	0	0	0	0	1	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	c0017	1647	1	0	0	0	0	1	copy fasta	WRAP53	chr17	7683477	7708502
WRAP73_chr1_3625770_3655103	0/1	c0001	1383	263	60	41	117	13	31	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	c0002	1383	41	1	4	28	1	7	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	1/0	c0003	1383	28	11	13	0	3	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	c0004	1383	23	4	14	0	1	4	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	c0005	1383	10	9	1	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	c0006	1383	5	5	0	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	c0007	1383	3	3	0	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	c0008	1383	2	2	0	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	c0009	1383	2	0	2	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	c0010	1383	1	0	1	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	c0011	1383	1	1	0	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	c0012	1383	1	1	0	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	c0013	1383	1	1	0	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	c0014	1383	1	0	0	1	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRNIP1_chr6_2760393_2791952	1/0	c0001	1998	213	32	41	114	10	15	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0002	1998	75	1	15	48	1	10	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0003	1998	49	14	7	24	3	1	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/1	c0004	1998	39	12	5	16	2	3	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0005	1998	15	14	1	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0006	1998	9	3	0	3	0	3	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0007	1998	7	0	7	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0008	1998	7	6	1	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0009	1986	5	0	5	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	c0010	1998	5	5	0	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952