JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WSCD2_chr12_108124288_108255537	0/0	c0007	1698	1	0	0	1	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	c0008	1698	1	0	1	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	c0009	1698	1	0	0	1	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	c0010	1698	1	0	0	1	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	c0011	1698	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WT1_chr11_32382775_32440539	0/0	c0001	1569	94	1	15	61	2	15	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	1/1	c0002	1569	89	8	25	40	2	12	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	c0003	1569	47	28	8	4	0	7	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	c0004	1569	32	23	3	5	0	1	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	c0005	1569	15	3	0	5	0	7	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	c0006	1569	14	1	1	8	0	4	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	c0007	1569	9	1	5	2	0	1	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	c0008	1569	7	6	1	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	c0009	1569	6	6	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	c0010	1569	6	5	1	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	c0011	1569	3	0	3	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	c0012	1569	2	2	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	c0013	1569	1	0	0	0	0	1	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	c0014	1569	1	1	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	c0015	1569	1	0	0	1	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	c0016	1569	1	1	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WTAP_chr6_159722506_159761319	1/1	c0001	1191	272	77	57	100	13	23	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	c0002	1191	115	15	17	65	3	15	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	c0003	1191	5	4	1	0	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	c0004	1191	2	0	0	2	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	c0005	1191	1	0	1	0	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	c0006	1191	1	0	0	1	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTIP_chr19_34476758_34517304	0/0	c0001	1293	240	24	39	144	11	22	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/1	c0002	1293	113	57	14	26	3	12	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	c0003	1293	22	6	13	0	0	3	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	c0004	1293	11	2	3	2	0	4	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	c0005	1293	2	0	0	2	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	c0006	1293	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	1/0	c0007	1293	1	0	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	c0008	1293	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	c0009	1293	1	0	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	c0010	1293	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	c0011	1293	1	0	0	0	0	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	c0012	1407	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	c0013	1293	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WWC1_chr5_168286645_168477303	0/0	c0001	3342	33	4	6	18	1	4	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0002	3342	21	2	5	11	1	2	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0003	3342	19	11	3	2	0	3	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0004	3339	18	1	7	8	0	2	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0005	3342	17	2	8	1	0	6	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0006	3339	17	12	5	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0007	3339	16	9	2	5	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0008	3339	15	1	1	13	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0009	3342	8	2	6	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0010	3339	7	1	2	0	2	2	copy fasta	WWC1	chr5	168286645	168477303