JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WWC1_chr5_168286645_168477303	0/0	c0011	3342	6	3	2	0	1	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/1	c0012	3342	6	0	2	0	2	1	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0013	3342	6	3	0	3	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0014	3339	5	5	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0015	3342	5	0	0	5	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	1/0	c0016	3342	4	1	2	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0017	3339	4	4	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0018	3339	4	0	3	1	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0019	3342	3	0	0	3	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0020	3339	3	0	0	2	0	1	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0021	3342	3	0	0	1	2	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0022	3339	3	3	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0023	3339	2	2	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0024	3342	2	2	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0025	3339	2	2	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0026	3339	2	2	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0027	3339	2	2	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0028	3339	2	2	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0029	3339	2	0	2	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0030	3339	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0031	3339	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0032	3339	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0033	3339	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0034	3342	1	0	0	0	1	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0035	3339	1	0	0	0	0	1	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0036	3339	1	0	0	1	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0037	3339	1	0	1	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0038	3342	1	0	0	1	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0039	3342	1	0	1	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0040	3339	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0041	3339	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0042	3342	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0043	3342	1	0	1	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0044	3339	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0045	3342	1	0	1	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	c0046	3339	1	0	0	1	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC2_chr4_183094257_183325777	1/1	c0001	3579	129	35	16	51	6	19	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	c0002	3579	40	12	8	17	1	2	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	c0003	3579	30	3	4	17	2	4	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	c0004	3579	7	1	3	0	0	3	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	c0005	3579	6	0	3	0	1	2	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	c0006	3579	6	5	1	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	c0007	3579	5	4	1	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	c0008	3579	4	1	0	3	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	c0009	3579	4	4	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	c0010	3579	3	2	1	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	c0011	3579	1	0	0	1	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	c0012	3579	1	1	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	c0013	3579	1	1	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	c0014	3579	1	0	0	1	0	0	copy fasta	WWC2	chr4	183094257	183325777