JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WWC2_chr4_183094257_183325777	0/0	c0015	3579	1	0	0	1	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	c0016	3579	1	0	0	1	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	c0017	3579	1	1	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	c0018	3579	1	0	1	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWOX_chr16_78094654_79217667	0/0	c0001	1245	75	18	11	30	1	15	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0002	1245	19	3	8	2	1	5	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0003	1245	6	6	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0004	1245	6	4	2	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0005	1245	6	6	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0006	1245	5	4	1	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0007	1245	3	3	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0008	1245	3	3	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0009	1245	2	2	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0010	1245	2	0	2	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0011	1245	1	0	0	0	0	1	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0012	1245	1	0	0	0	0	1	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0013	1245	1	0	1	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0014	1245	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0015	1245	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0016	1245	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0017	1245	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0018	1245	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0019	1245	1	0	0	1	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0020	1245	1	0	0	1	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0021	1245	1	0	1	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0022	1245	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0023	1245	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0024	1245	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	c0025	1245	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWP1_chr8_86337547_86473503	1/1	c0001	2769	260	51	48	119	8	32	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	c0002	2769	24	20	3	0	0	1	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	c0003	2769	11	10	1	0	0	0	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	c0004	2769	1	0	1	0	0	0	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	c0005	2769	1	1	0	0	0	0	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	c0006	2769	1	0	0	1	0	0	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	c0007	2769	1	0	1	0	0	0	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	c0008	2769	1	0	0	0	0	1	copy fasta	WWP1	chr8	86337547	86473503
WWP2_chr16_69757332_69946739	0/0	c0001	2613	91	16	21	38	3	13	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/1	c0002	2613	69	28	17	14	5	4	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	1/0	c0003	2613	40	2	17	6	4	10	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0004	2613	39	2	4	27	1	5	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0005	2613	28	2	0	23	0	3	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0006	2613	14	14	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0007	2613	6	4	0	0	1	1	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0008	2613	4	0	0	4	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0009	2613	3	3	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0010	2613	3	3	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0011	2613	2	2	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0012	2613	2	2	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0013	2613	2	0	0	2	0	0	copy fasta	WWP2	chr16	69757332	69946739