JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
WWP2_chr16_69757332_69946739	0/0	c0014	2613	1	1	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0015	2613	1	0	0	1	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0016	2613	1	0	0	1	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0017	2613	1	1	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0018	2613	1	0	0	1	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0019	2613	1	1	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0020	2613	1	0	1	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0021	2613	1	1	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0022	2613	1	1	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0023	2613	1	1	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	c0024	2613	1	0	0	1	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWTR1_chr3_149512235_149663025	1/0	c0001	1203	266	78	47	106	6	28	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/1	c0002	1207	37	10	5	20	0	1	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	c0003	1203	18	3	2	12	0	1	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	c0004	1207	5	0	0	5	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	c0005	1203	4	0	2	0	0	2	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	c0006	1203	1	0	0	1	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	c0007	1207	1	0	0	1	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	c0008	1203	1	0	0	1	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	c0009	1203	1	1	0	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
XAB2_chr19_7614525_7634545	1/0	c0001	2568	204	39	36	99	5	24	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0002	2568	84	19	12	35	4	14	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/1	c0003	2568	38	6	13	11	3	4	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0004	2568	15	2	11	2	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0005	2568	13	12	1	0	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0006	2568	7	6	1	0	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0007	2568	4	0	0	4	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0008	2568	3	3	0	0	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0009	2568	2	2	0	0	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0010	2568	2	0	0	2	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0011	2568	2	0	0	2	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0012	2568	2	0	0	2	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0013	2568	2	0	0	2	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0014	2568	1	1	0	0	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0015	2568	1	1	0	0	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0016	2568	1	1	0	0	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0017	2568	1	0	0	1	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0018	2568	1	0	0	1	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0019	2554	1	0	0	1	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0020	2568	1	0	0	1	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0021	2568	1	1	0	0	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0022	2568	1	1	0	0	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0023	2568	1	0	0	1	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0024	2568	1	1	0	0	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	c0025	2568	1	1	0	0	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAF1_chr17_6751046_6780647	1/1	c0001	906	184	28	46	76	10	22	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	c0002	906	143	10	18	91	4	20	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	c0003	906	77	26	3	44	2	2	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	c0004	906	28	24	1	3	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	c0005	906	5	4	1	0	0	0	copy fasta	XAF1	chr17	6751046	6780647