JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
XDH_chr2_31329321_31419742	0/0	c0004	4002	17	0	5	9	0	3	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0005	4002	13	12	1	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0006	4002	10	10	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0007	4002	10	9	1	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0008	4002	4	0	1	3	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0009	4002	4	1	1	0	0	2	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0010	4002	4	0	0	4	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0011	4002	3	3	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0012	4002	3	0	0	3	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0013	4002	3	0	0	3	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0014	4002	3	0	0	3	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0015	4002	3	3	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0016	4002	3	2	1	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0017	4002	2	0	0	2	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0018	4002	2	2	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0019	4002	2	0	1	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0020	4002	2	0	0	0	2	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0021	4002	2	0	0	0	1	1	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0022	4002	2	2	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0023	4002	2	1	1	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0024	4002	2	0	0	0	0	2	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0025	4002	1	0	0	0	0	1	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0026	4002	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0027	4002	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/1	c0028	4002	1	0	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0029	4002	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0030	4002	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0031	4002	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0032	4002	1	0	1	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0033	4002	1	0	1	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0034	4002	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0035	4002	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0036	4002	1	0	1	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0037	4002	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0038	4002	1	0	1	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0039	4002	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0040	4002	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0041	4002	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0042	4002	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0043	4002	1	0	0	0	0	1	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0044	4002	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0045	4002	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0046	4002	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0047	4002	1	0	0	0	0	1	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0048	4002	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0049	4002	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XG_chrX_2747040_2821500	0/0	c0001	588	281	53	49	142	9	28	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	c0002	588	16	16	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	1/0	c0003	588	12	6	4	1	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/1	c0004	588	7	0	2	0	4	0	copy fasta	XG	chrX	2747040	2821500