JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
XG_chrX_2747040_2821500	0/0	c0005	588	2	2	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	c0006	589	1	0	0	1	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	c0007	588	1	0	0	0	0	1	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	c0008	588	1	1	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	c0009	588	1	1	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XIAP_chrX_123855053_123918972	1/1	c0001	1494	204	39	39	98	4	22	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	c0002	1494	77	41	20	7	5	4	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	c0003	1494	2	0	0	2	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	c0004	1494	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	c0005	1494	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	c0006	1491	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIRP1_chr3_39178215_39197595	0/1	c0001	5532	203	29	43	104	6	20	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0002	5532	38	1	10	16	3	8	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0003	5532	26	7	8	11	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0004	5532	22	0	2	19	0	1	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0005	5532	14	6	0	2	0	6	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0006	5532	13	11	2	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0007	5532	9	8	1	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0008	5532	5	0	5	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0009	5532	5	5	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0010	5532	4	4	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0011	5532	4	0	2	0	2	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0012	5532	3	0	0	3	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	1/0	c0013	5532	3	1	1	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0014	5532	3	0	1	0	1	1	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0015	5532	2	0	2	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0016	5532	2	2	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0017	5532	2	0	0	0	2	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0018	5532	2	0	0	2	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0019	5532	2	2	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0020	5532	2	0	0	1	0	1	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0021	5532	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0022	5532	1	0	0	0	0	1	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0023	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0024	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0025	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0026	5532	1	0	0	0	1	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0027	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0028	5532	1	0	1	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0029	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0030	5532	1	0	1	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0031	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0032	5532	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0033	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0034	5532	1	0	0	0	0	1	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0035	5532	1	0	1	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0036	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0037	5532	1	0	0	0	1	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0038	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0039	5532	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595