JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
XIRP1_chr3_39178215_39197595	0/0	c0040	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0041	5532	1	0	0	0	0	1	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0042	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0043	5532	1	0	0	0	0	1	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0044	5532	1	0	0	0	0	1	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0045	5532	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0046	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0047	5532	1	0	0	0	0	1	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0048	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0049	5532	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0050	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0051	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0052	5532	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0053	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0054	5532	1	0	0	0	0	1	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0055	5532	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0056	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0057	5532	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	c0058	5532	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP2_chr2_166883480_167264753	0/0	c0001	10650	61	23	6	21	1	10	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0002	10650	27	13	3	6	0	5	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0003	10650	14	1	1	9	1	2	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0004	10650	10	0	0	10	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0005	10650	7	0	0	7	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0006	10650	6	0	0	6	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0007	10650	5	0	1	4	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0008	10650	5	4	1	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0009	10650	4	0	0	4	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0010	10650	3	3	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0011	10650	3	3	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0012	10650	3	3	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0013	10650	3	3	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0014	10650	3	0	0	3	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0015	10650	2	0	0	0	0	2	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0016	10650	2	2	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0017	10650	2	1	0	0	0	1	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0018	10650	2	2	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0019	10650	2	0	0	2	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0020	10650	2	0	0	2	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0021	10650	1	0	0	1	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0022	10650	1	0	0	1	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0023	10650	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0024	10650	1	0	0	0	0	1	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0025	10650	1	0	0	1	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0026	10650	1	0	0	0	0	1	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0027	10650	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0028	10650	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0029	10650	1	0	0	1	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0030	10650	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	c0031	10650	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753